Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1104
(796 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 347 1e-96
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 336 3e-93
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 305 4e-84
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 298 5e-82
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 234 1e-62
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 130 2e-31
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 100 2e-22
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 76 7e-15
SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces... 30 0.33
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 1.0
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 3.1
SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr ... 26 5.4
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar... 25 9.4
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 25 9.4
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 25 9.4
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 25 9.4
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 347 bits (852), Expect = 1e-96
Identities = 163/200 (81%), Positives = 180/200 (90%)
Frame = +3
Query: 72 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 251
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 252 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 431
TIFDAKRLIGRKF+D VQ+DMKHWPF+V+S GKP ++V YKGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRKFDDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISSMVLM 123
Query: 432 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 611
KM+ETAEAYLG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGL
Sbjct: 124 KMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL 183
Query: 612 DKKGTGERNVLIFDLGGGTF 671
D+ GE NVLIFDLGGGTF
Sbjct: 184 DRSNQGESNVLIFDLGGGTF 203
Score = 85.4 bits (202), Expect = 8e-18
Identities = 36/42 (85%), Positives = 42/42 (100%)
Frame = +1
Query: 670 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 795
FDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF+QEFK
Sbjct: 203 FDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFIQEFK 244
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 336 bits (825), Expect = 3e-93
Identities = 158/200 (79%), Positives = 177/200 (88%)
Frame = +3
Query: 72 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 251
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP+N
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 252 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 431
TIFDAKRLIGR+F D VQ+DMKHWPF+V+ GKP I+V +KGE KTF PEE+SSMVL
Sbjct: 64 TIFDAKRLIGRRFNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISSMVLL 123
Query: 432 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 611
KM+E+AEA+LG V +AV+TVPAYFNDSQRQATKDAG I+GLNVLRIINEPTAAAIAYGL
Sbjct: 124 KMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL 183
Query: 612 DKKGTGERNVLIFDLGGGTF 671
D+ E NVLIFDLGGGTF
Sbjct: 184 DRSNQHETNVLIFDLGGGTF 203
Score = 84.2 bits (199), Expect = 2e-17
Identities = 36/42 (85%), Positives = 41/42 (97%)
Frame = +1
Query: 670 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 795
FDVS+LTIE+GIFEVK+TAGDTHLGGEDFD+R+VNHF QEFK
Sbjct: 203 FDVSLLTIEEGIFEVKATAGDTHLGGEDFDSRLVNHFAQEFK 244
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 305 bits (749), Expect = 4e-84
Identities = 144/200 (72%), Positives = 166/200 (83%)
Frame = +3
Query: 72 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 251
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP N
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 252 TIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLT 431
T+FDAKRLIGR++ED Q D+KHWPF+V+ + G P I+V Y GE K F +E+S+MVLT
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVIDNNGIPTIEVNYLGEKKQFTAQEISAMVLT 127
Query: 432 KMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL 611
KMKE +EA L K V+ AVITVPAYF+DSQR ATKDAG I+GLNVLRIINEPTAAAIAYGL
Sbjct: 128 KMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVLRIINEPTAAAIAYGL 187
Query: 612 DKKGTGERNVLIFDLGGGTF 671
D K +NVLIFDLGGGTF
Sbjct: 188 DAKSDKPKNVLIFDLGGGTF 207
Score = 74.5 bits (175), Expect = 2e-14
Identities = 31/42 (73%), Positives = 37/42 (88%)
Frame = +1
Query: 670 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 795
FDVS+L I+ G+FEV +TAGDTHLGGEDFDN +V HF+QEFK
Sbjct: 207 FDVSLLKIQGGVFEVLATAGDTHLGGEDFDNALVEHFIQEFK 248
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 298 bits (732), Expect = 5e-82
Identities = 136/199 (68%), Positives = 171/199 (85%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 254
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP NT
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 255 IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSSMVLTK 434
IFD KRLIGRKF++ T+ D+K +PF +V+D +P ++V G+ K F PEE+S+M+L+K
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVNDKNRPLVEVNVGGKKKKFTPEEISAMILSK 157
Query: 435 MKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLD 614
MK+TAEAYLGK V +AV+TVPAYFND+QRQATKDAGTI+GLNV+RI+NEPTAAAIAYGLD
Sbjct: 158 MKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLD 217
Query: 615 KKGTGERNVLIFDLGGGTF 671
K T E++++++DLGGGTF
Sbjct: 218 KTDT-EKHIVVYDLGGGTF 235
Score = 65.7 bits (153), Expect = 7e-12
Identities = 25/41 (60%), Positives = 37/41 (90%)
Frame = +1
Query: 670 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEF 792
FDVS+L+I++G+FEV +T+GDTHLGGEDFDNR++N+ + +
Sbjct: 235 FDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTY 275
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 234 bits (572), Expect = 1e-62
Identities = 114/204 (55%), Positives = 146/204 (71%), Gaps = 1/204 (0%)
Frame = +3
Query: 63 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 239
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 240 NPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVSS 419
NP NT F KRLIGR+F++ VQ D+K P+++V + KT+ P ++
Sbjct: 109 NPENTFFATKRLIGRRFKEPEVQRDIKEVPYKIVEHSNGD---AWLEARGKTYSPSQIGG 165
Query: 420 MVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAI 599
+L+KM+ETA YLGK V+NAV+TVPAYFNDSQRQATK AG I+GLNVLR++NEPTAAA+
Sbjct: 166 FILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVLRVVNEPTAAAL 225
Query: 600 AYGLDKKGTGERNVLIFDLGGGTF 671
AYGLDKK + V +FDLGGGTF
Sbjct: 226 AYGLDKK--NDAIVAVFDLGGGTF 247
Score = 65.3 bits (152), Expect = 1e-11
Identities = 27/42 (64%), Positives = 34/42 (80%)
Frame = +1
Query: 670 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 795
FD+SIL + +G+FEV+ST GDTHLGGEDFD +V H V+ FK
Sbjct: 247 FDISILELNNGVFEVRSTNGDTHLGGEDFDVALVRHIVETFK 288
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 130 bits (314), Expect = 2e-31
Identities = 72/209 (34%), Positives = 117/209 (55%), Gaps = 5/209 (2%)
Frame = +3
Query: 60 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 239
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 240 NPNNTIFDAKRLIGRKFEDATVQ-ADMKHWPFEVVSDGGKPKIKVAYKGEDKTFFPEEVS 416
N NT+ KRL GR ++D ++ + ++ G KV Y E+ F ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEIKDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQLI 122
Query: 417 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 596
+ TK+K AEA L +V + VI++PA+F D QR+A +A I+GLN LR++N+ AAA
Sbjct: 123 AAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPLRLMNDNAAAA 182
Query: 597 IAYGLDKKGTGE----RNVLIFDLGGGTF 671
+ YG+ K E R V I D G +
Sbjct: 183 LTYGITKTDLPEPESPRRVAIVDFGHSNY 211
Score = 39.1 bits (87), Expect = 7e-04
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +1
Query: 670 FDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 795
+ VSI+ G F +KST D +LG + D ++++F EFK
Sbjct: 211 YSVSIVEFSRGQFHIKSTVCDRNLGSRNMDKALIDYFAAEFK 252
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 100 bits (240), Expect = 2e-22
Identities = 55/201 (27%), Positives = 108/201 (53%), Gaps = 6/201 (2%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNNT 254
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N +N+
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRNADNS 86
Query: 255 IFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKPKIKVAYKGED------KTFFPEEVS 416
+ + + L+G+ ++ T+ H+ V+ G+ K+ + ++ K E S
Sbjct: 87 VTNFRDLLGKSHDELTLHHC--HYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEAS 144
Query: 417 SMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAA 596
L ++ E+AE +LG V V++VP YF D+QR+A + A +GL VL++I++P A
Sbjct: 145 VRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVLQLIHDPAAVI 204
Query: 597 IAYGLDKKGTGERNVLIFDLG 659
+A ++ ++ V++ + G
Sbjct: 205 LALMYSEEVLIDKTVVVANFG 225
Score = 36.3 bits (80), Expect = 0.005
Identities = 13/41 (31%), Positives = 28/41 (68%)
Frame = +1
Query: 673 DVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFVQEFK 795
+VS+++++ G+ + ++ D +LGGE + +VN F +EF+
Sbjct: 230 EVSVVSVKGGLMTILASVHDENLGGEQLTDVLVNFFAKEFE 270
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 75.8 bits (178), Expect = 7e-15
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 4/202 (1%)
Frame = +3
Query: 75 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPNN 251
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P +
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPAH 84
Query: 252 TIFDAKRLIGRK-FEDATVQADMKHWPFEVVSDGGKPKIKVAYK-GEDKTFFPEEVSSMV 425
+I + K L+ E VQ +P + + + +++ +++ + EE+ +M
Sbjct: 85 SIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIAMT 144
Query: 426 LTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAY 605
+ AE + + + V+TVP +FN+ QR +A I +VL +I++ A AI Y
Sbjct: 145 MEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLALIDDNVAVAIEY 204
Query: 606 GLDKK-GTGERNVLIFDLGGGT 668
L + T +I+D G G+
Sbjct: 205 SLSRSFSTDPTYNIIYDSGSGS 226
>SPBC18A7.01 ||SPBC4F6.19c|X-Pro dipeptidase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 451
Score = 30.3 bits (65), Expect = 0.33
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 180 VAFTDTERLIGDAAKNQVAMNPNNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSDGGKP 359
+ F+D E GD A + P + AK L+G+ + + D P++V+ D P
Sbjct: 125 IIFSDDEPYPGDVASRIYFLVPKFELPRAKELVGKNIDAKYITWDEDENPYQVLYDRLGP 184
Query: 360 KIKVAYKGEDKTFFPE 407
+K+ G + F +
Sbjct: 185 -LKLMIDGTVRNFIAQ 199
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 67 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 162
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 27.1 bits (57), Expect = 3.1
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = -3
Query: 779 KWLTMRLSKSSPPKWVSPAVDFTSKIPSSMVRMDTSKGTA--AEVKDKYISFSSTLFVKT 606
K + L P W SP + ++ + D+ K A A K+K+++ +
Sbjct: 100 KRFSKSLQLQDPNVWPSPEIA-EKQVEDRKLSDDSQKPLAPKANGKEKWVTITPNFTHTP 158
Query: 605 VSNRSSSRFIDD 570
+SNR SSR +D
Sbjct: 159 ISNRKSSRSRND 170
>SPCC320.09 |hem15||ferrochelatase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -3
Query: 794 LNSWTKWLTMRLSKSSPPKWVSPAVDF 714
LN K++ SK P W+SPA DF
Sbjct: 256 LNYKNKFVNAWQSKVGPLPWMSPATDF 282
>SPAC2F7.03c |pom1||DYRK family protein kinase
Pom1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1087
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +2
Query: 53 QNGKSTRSRNRSGYHVLLRWCLPAREGGDHRQRPGQQDHSVLCCVHRHRASHRRCRQEPG 232
+NGK T +R +S + W P++E R G D + V R + + +EP
Sbjct: 477 RNGKKTPTRTKSRMQQFINWFKPSKE----RSSNGNSDSASPPPVPRLSITRSQVSREP- 531
Query: 233 GDEPQQ 250
++P++
Sbjct: 532 -EKPEE 536
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 153 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCI 49
G W SP S + H ++++ +F +RVL C+
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCM 310
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 411 VSSMVLTKMKETAEAYLGKTVQNAVITVPAYFNDSQRQATK 533
++ ++ K A LGK + FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 25.4 bits (53), Expect = 9.4
Identities = 20/76 (26%), Positives = 37/76 (48%)
Frame = -3
Query: 794 LNSWTKWLTMRLSKSSPPKWVSPAVDFTSKIPSSMVRMDTSKGTAAEVKDKYISFSSTLF 615
LNS T + +SPP S V+ ++ I SS V ++ T++ V + +S+
Sbjct: 1638 LNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTA 1697
Query: 614 VKTVSNRSSSRFIDDS 567
+ T + +SS ++ S
Sbjct: 1698 LNTSTPITSSSVLNSS 1713
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,574,609
Number of Sequences: 5004
Number of extensions: 78263
Number of successful extensions: 266
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 259
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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