Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1103
         (771 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53158| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.036
SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)                  30   1.8  
SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)                 29   3.1  
SB_15063| Best HMM Match : Fez1 (HMM E-Value=0.17)                     29   4.2  
SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)                 28   7.3  
SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)                28   9.6  
SB_44562| Best HMM Match : 7tm_1 (HMM E-Value=9e-12)                   28   9.6  
SB_19730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.6  

>SB_53158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 35.9 bits (79), Expect = 0.036
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 199 NRLNNKKIRNYYLKKICILLDLNFKHVIESSFDKNHIVAKL-CDATRAKEWQTKSRER 369
           N L +  I N  L+ +C  L L + H++  +    HI   + C AT+  +WQ +SRER
Sbjct: 326 NDLVSDHIINNELRTLCGSLSLRYGHLMGLAAGVLHIARHVDCPATKILDWQAQSRER 383


>SB_2086| Best HMM Match : 7tm_1 (HMM E-Value=9.1e-07)
          Length = 827

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 23/101 (22%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
 Frame = +1

Query: 43  FEQLINVSLLKSLIKTQIDENV-SDNIKSMSEKLKRLECDNLTDSVEIYGIHDNRLNNKK 219
           +E+L++  +    I  +  +++  D++ S   K+  + C    +  EIY   DN+L  ++
Sbjct: 457 YEELLSAHVQALPINERNGQHILRDSVTSPGSKVLTMYCKKQDNDKEIYNFKDNQLIIQR 516

Query: 220 IRNYYLKKICILLD---LNFKHVIESSFDKNHIVAKLCDAT 333
                +++    +D   L F   I SS     +VA  C  T
Sbjct: 517 KTRQEVQESAFAMDSKELKFNMEITSSSPLASVVAGFCVVT 557


>SB_49691| Best HMM Match : E-MAP-115 (HMM E-Value=4.7)
          Length = 170

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = +1

Query: 34  MDQFEQLINVSLLKSLIKTQIDENVSDNIKSMSEKLKRLECDNLTDSVEIYG 189
           M+  +Q + +S +  +  T  DEN+ DN+    E+ +   C+ L   +  +G
Sbjct: 97  MEAMKQYVPLSNMGFITGTDEDENMPDNVDYKGERRRMAICEELEREIFFWG 148


>SB_15063| Best HMM Match : Fez1 (HMM E-Value=0.17)
          Length = 444

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 32/141 (22%), Positives = 59/141 (41%)
 Frame = +1

Query: 199 NRLNNKKIRNYYLKKICILLDLNFKHVIESSFDKNHIVAKLCDATRAKEWQTKSRERRLK 378
           N  NN ++    + K+   LD N++H++E         +++C+     EW+   +ER L 
Sbjct: 281 NSSNNTEMEET-ITKLSQQLD-NYRHIVEQQESLIEDDSRMCE-----EWERLQQERALY 333

Query: 379 NFNLNINYDGPVKIFVAATAEQKLLLKKTRDALLPFYKYISICKNGVMVRRDEKSRVFIV 558
                 ++D   K F  A  +     KK  +    +YK   +       R   KSR+F+ 
Sbjct: 334 E-KQKKSFDEERKNFTDAAVKLGHERKKFEEERTAYYKQQLMIT--PQSRTSAKSRLFLF 390

Query: 559 KNEQNIEYLKANKYYAFHSDS 621
           +     E+  + K+    +DS
Sbjct: 391 RGNLITEHPSSIKHRRLLADS 411


>SB_14872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1182

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = +1

Query: 13   HRVDIINMDQFEQLINVSLLKSLIKTQID--ENVSDNI-KSMSEKLKRLECDNLTDSVEI 183
            H+ + +++ Q   L+ V L+ S ++T I+    V D   KS  E + ++ C       E 
Sbjct: 811  HQAETLSVIQSLILVFVKLMNSQLETTIEFLSGVPDPTGKSALENILKIWCAR---QPEF 867

Query: 184  YGIHDNRLNNKKIRN 228
            YG++DN+++   + N
Sbjct: 868  YGVYDNKVSTLALCN 882


>SB_31647| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 381

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +1

Query: 403 DGPVKIFVAATAEQKLLLKKTRDALLPF-YKYISICKNGVMVRRDEKSRVFIVKNEQNIE 579
           D  + I  + TA  K + K        F +K+I      V++R+DE S    +K+ Q++ 
Sbjct: 299 DNSIYISESLTANNKAIFKGALSFKKEFRFKFIWTVHGKVLIRKDEHSPAIQIKSLQHLA 358

Query: 580 YLKANK 597
            L++ +
Sbjct: 359 DLRSEQ 364


>SB_32738| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-13)
          Length = 323

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = -1

Query: 633 KIINAIAMKSVIFVGFEIFNILLIFNNKHATFFVASHHNTVFTNGNVFV 487
           +I NA  M SVIF G  +  +     +++   ++   +N++ T   V +
Sbjct: 116 RIANAFMMSSVIFTGVSVLTLTTATVDRYLALYLHLSYNSIVTVQRVLI 164


>SB_52819| Best HMM Match : E-MAP-115 (HMM E-Value=0.82)
          Length = 883

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
 Frame = +1

Query: 349 QTKSRERRLKNFNLNINYDGPVKIFVAAT-AEQK----LLLKKTRDALLPFYKYISICKN 513
           QTKS E R K    NI  +      +AAT AE+K    L +K    ALL   + I+  + 
Sbjct: 15  QTKSTEDRPKGDGENIVENAEANTTIAATSAEEKANEDLKIKCLEQALLERNESIAELEK 74

Query: 514 GVMVRRDEKSRVFIVKNEQNIEYLKANK 597
            +   R E+    +    + +E L+  K
Sbjct: 75  NIEQMRTERDSAILQSQGEQLENLQNAK 102


>SB_44562| Best HMM Match : 7tm_1 (HMM E-Value=9e-12)
          Length = 276

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/72 (22%), Positives = 34/72 (47%)
 Frame = -2

Query: 566 SFLTINTRLFSSRLTITPFLQMEMYL*NGNRASRVFLSNSFCSAVAATNIFTGPS*LMFK 387
           S +T+ T      L+ TPF    + +     +++ + + + CS +A TN    P  L ++
Sbjct: 171 SIVTMVTVFIIFILSYTPFCVSVVMVAAMGESAKSWSAEALCSVIAFTNACVNPLILFWR 230

Query: 386 LKFLSRRSRDLV 351
           ++ +    R L+
Sbjct: 231 IREIRNAGRQLL 242


>SB_19730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
 Frame = +1

Query: 478 LPFYKYISICKNGVMVRRDEKSRVFI---VKNEQNIEYLKANKYYAFHSDSVDN 630
           L + K +S     +++   +K++ +I    K  +N+EY+K  +YY+   D+  N
Sbjct: 151 LEYLKTLSPTVRDLLIEAGDKAKRYIDRMKKTGENVEYMKVAQYYSSALDTAMN 204


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,765,713
Number of Sequences: 59808
Number of extensions: 330468
Number of successful extensions: 962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)