Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1102
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     31   0.13 
SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    27   2.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    27   3.7  
SPBC725.03 |||conserved fungal protein|Schizosaccharomyces pombe...    26   6.5  

>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +1

Query: 424 PTLHMTPWVMQQHAHLRLQYYRNSVHLYRILWVVINPVAIG 546
           P  +M  WV ++   + ++ Y+  +  Y  LW+V N +  G
Sbjct: 289 PVQYMKLWVFRKSKRVAIEDYKEYIRFYNNLWLVANDMIFG 329


>SPAC1687.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1379

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +1

Query: 538 AIGAQEANSRSARSLVAMACDSHSPYLRSLHAAQKAFGDQ 657
           A+  Q  ++  + S ++  CDSH P   S+ A+Q+A  D+
Sbjct: 539 ALSQQTESASKSSSNISEMCDSHPPSNFSISASQQASKDR 578


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +3

Query: 609 PVPPFFTCGAEGFWRPTSDPSLPLIYPACSPASPA 713
           P PP     A     P++ PSLP+  PA  P  P+
Sbjct: 418 PTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPS 452


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 282 LWVIAKNGSSIVNW-DAPVFSDNVGVAKVVEKSGH 383
           +W  +++GS I+ W D P+F+ +VG A     S H
Sbjct: 317 IWSTSRDGS-ILRWKDEPLFNQDVGAALSKHTSSH 350


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 15  HLTKVQVW-NRALDVTNEVQKQVRDCRTEPVLYSGLTLTWAGYDDIIGGVERIVPSHCGQ 191
           HL+ ++ W   +++  NE   +   C++     S   L W G  +    V+ +VP  CG 
Sbjct: 221 HLSCIRKWCKNSIEQRNEDAWRCPYCQSNQTETSLHYLCWCGKQEKPEFVKNLVPHSCGD 280

Query: 192 RVCPNG-YNGQKCQ 230
              P G   GQ C+
Sbjct: 281 ---PCGKTRGQDCE 291


>SPBC725.03 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -1

Query: 163 STPPIMSSYPAQVKVKPL 110
           STPP  S Y   VKV PL
Sbjct: 176 STPPSYSKYQGDVKVSPL 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,054,740
Number of Sequences: 5004
Number of extensions: 64427
Number of successful extensions: 164
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)