Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1102
         (742 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0576 + 19638725-19638779,19638988-19639144,19639871-196401...    29   2.9  
12_02_1178 + 26718283-26719368                                         29   5.1  
07_03_1573 + 27829967-27830338,27830821-27831510,27831594-278317...    29   5.1  
03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,662...    29   5.1  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    28   9.0  
02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784     28   9.0  
01_06_0035 + 25782410-25783384,25784130-25784696                       28   9.0  

>07_03_0576 +
           19638725-19638779,19638988-19639144,19639871-19640113,
           19640267-19640801,19640897-19641054,19641194-19641626
          Length = 526

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = -2

Query: 528 DNHPEDPVKVDRIPIIL*S*MCMLLHYPRRH--MQCRLCHMLPKQGSLLAYVQIF 370
           + H E    +D+IP    S M ++LH P  H  + C    ++P +  +L Y + +
Sbjct: 147 NQHEEGNYSMDQIPEDWRSLMSLMLHNPHEHGYLICNYAPLIPIENRILFYFKAY 201


>12_02_1178 + 26718283-26719368
          Length = 361

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 403 ARFSPGLCPD--FSTTFATPTLSLNTGASQLTIDDP 302
           ARF P +C D     + A PTL  +TGA+ LT++ P
Sbjct: 83  ARFFP-MCGDSVVMVSDAAPTLVYDTGAAALTVESP 117


>07_03_1573 +
           27829967-27830338,27830821-27831510,27831594-27831781,
           27832286-27832318,27832364-27832605,27833178-27833320,
           27833649-27833825,27834104-27834256,27834639-27834694,
           27834998-27835157,27835301-27835348
          Length = 753

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 17/50 (34%), Positives = 19/50 (38%)
 Frame = -1

Query: 643 PSAPHVKNGGTGCENRKPSRQAISQTLNWPPAPQSRQD**PPRGSGKGGQ 494
           P+A   K         KP    I      PP P+ R    PP GSG G Q
Sbjct: 9   PAASSSKVSSVSSSKPKPKPTPIRNPTPPPPPPRRRTPPPPPPGSGPGPQ 58


>03_02_0234 + 6625417-6626184,6626314-6626339,6626435-6626531,
            6627009-6627116,6627194-6627328,6627429-6627528,
            6627763-6627974,6628060-6628125,6628231-6628464,
            6628583-6628641,6628716-6628782,6628863-6629192,
            6629267-6629335,6629417-6629503,6629605-6629692,
            6630057-6630178,6630251-6630355,6630442-6630485,
            6630558-6630627,6630711-6630814,6630980-6631189,
            6632935-6633018,6633291-6634003,6634115-6634649,
            6634703-6634789,6634826-6634970,6635049-6635125,
            6635215-6635359,6635462-6635626,6635725-6635958
          Length = 1761

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -1

Query: 640  SAPHVKNGGTGCENRKPSRQAISQTLNWPPAPQSRQD**PPRGSGKGGQNSDN 482
            SAP    GG G  +  PS  +       PPAP++ Q    P+ SG GG +SD+
Sbjct: 1186 SAPPANTGGGG--SPPPSHGS-------PPAPKAVQSQPAPKRSGDGGSSSDS 1229


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -1

Query: 208 PLGQTLCPQCDGTIRSTPPIMSSYPAQVKVKP 113
           P GQT  PQ  G      P   +YP Q +V+P
Sbjct: 236 PQGQTYPPQPQGETYQPQPQRETYPPQPQVQP 267


>02_05_1315 + 35675285-35676688,35676816-35677255,35677341-35678784
          Length = 1095

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
 Frame = +1

Query: 445 WVMQQHAHLRLQY----YRNSVHL-YRILWVVIN-PVAIGAQEANSRSARSLVAMACDSH 606
           W     AH+++Q+    + +S+ L + +L + I  P A GA++   + AR L   AC++H
Sbjct: 277 WAPAIAAHVKVQFGGMAHSSSLMLLHSLLTLFIQFPDAFGAEDER-KMARRLALAACEAH 335

Query: 607 SPYLRSLHAAQKAFG 651
            P    L A     G
Sbjct: 336 RPLTARLLALHWLLG 350


>01_06_0035 + 25782410-25783384,25784130-25784696
          Length = 513

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -1

Query: 727 LKTR*AGEAGEQAGYISGKLGSDVGLQKPSAPHVKNGGTGCENRKPSRQAI 575
           L+ R AG   +  GY+S KL +  G + P A   + GG G      +R+ +
Sbjct: 438 LRDRKAGTEEDGGGYVSQKLHAGTGRRHPRASR-RGGGGGAVVATTTRRGV 487


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,136,922
Number of Sequences: 37544
Number of extensions: 504655
Number of successful extensions: 1454
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)