SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1102
         (742 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical pr...   151   4e-37
Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical pr...    64   1e-10
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    39   0.003
AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode asta...    36   0.040
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    35   0.070
Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical pr...    33   0.16 
AJ561221-1|CAD99221.1|  302|Caenorhabditis elegans NAS-33 protei...    33   0.16 
Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical pr...    33   0.28 
Z78415-9|CAI58633.1|  685|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z78415-8|CAB01675.2|  765|Caenorhabditis elegans Hypothetical pr...    31   0.65 
AY912076-1|AAX81408.1|  685|Caenorhabditis elegans extracellular...    31   0.65 
Z74042-2|CAA98528.2|  379|Caenorhabditis elegans Hypothetical pr...    30   1.5  
AJ561210-1|CAD99212.1|  151|Caenorhabditis elegans NAS-20 protei...    30   1.5  
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha...    30   2.0  
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha...    30   2.0  
Z74042-7|CAA98532.1|  155|Caenorhabditis elegans Hypothetical pr...    29   4.6  
U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin rec...    29   4.6  
U00036-3|AAT92065.1|  529|Caenorhabditis elegans Dumpy : shorter...    29   4.6  
U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter...    29   4.6  
AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-l...    29   4.6  
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    29   4.6  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    29   4.6  
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical pr...    28   8.0  
U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astaci...    28   8.0  
AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pomb...    28   8.0  
AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pomb...    28   8.0  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    28   8.0  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    28   8.0  

>U80815-2|AAB37995.1| 1372|Caenorhabditis elegans Hypothetical protein
            W02C12.1 protein.
          Length = 1372

 Score =  151 bits (367), Expect = 4e-37
 Identities = 77/245 (31%), Positives = 116/245 (47%)
 Frame = +3

Query: 6    FQGHLTKVQVWNRALDVTNEVQKQVRDCRTEPVLYSGLTLTWAGYDDIIGGVERIVPSHC 185
            F G + +V VWNR +D   E+   V+ C+    +Y GL + + G+  IIG VER   S C
Sbjct: 553  FVGSIARVGVWNRVIDFEEELPLMVQHCQRSEEIYKGLLVRFEGFTKIIGRVERTHKSTC 612

Query: 186  GQRVCPNGYNGQKCQQLEVDKEPPRVDRCPGDLWVIAKNGSSIVNWDAPVFSDNVGVAKV 365
            G          ++   ++  +    ++ CP D+ + + +  + V W  P F  +    + 
Sbjct: 613  GV---------EEKSAMQKSQSQILIEDCPSDMVISSMDRETNVTWPEPTFLSSNSKIEK 663

Query: 366  VEKSGHKPGENLAWGXXXXXXXXXXXVGNAATCTFKITVLSEFCPPLPDPLGGYQSCRDW 545
            +EK+  K G+   WG             N A C FKI V  E C    DP+ G QSC  W
Sbjct: 664  IEKN-LKQGQMFTWGEYDVLYTATDNATNQAQCNFKIRVGKENCVDAADPVNGVQSCESW 722

Query: 546  GAGGQFKVCEIACRDGLRFSQPVPPFFTCGAEGFWRPTSDPSLPLIYPACSPASPAQRVF 725
            G   ++K C + CRDG  F +    F+TC A+G W+P   PS    YP C+   PA +V 
Sbjct: 723  GPQLKYKACSVECRDGFEFPRSPAVFYTCAADGKWKPNKSPSTMFRYPQCTKHVPATKVV 782

Query: 726  KVSML 740
             V ++
Sbjct: 783  IVRII 787


>Z81091-2|CAB03143.2| 2972|Caenorhabditis elegans Hypothetical protein
            F55H12.3 protein.
          Length = 2972

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 63/243 (25%), Positives = 99/243 (40%), Gaps = 11/243 (4%)
 Frame = +3

Query: 18   LTKVQVWNRALDVTNEVQKQVRDCRTEPVL-----YSGLTLTWAGYDDIIGGVERIVPSH 182
            LT+ Q+   A D  + +     D    P +     ++ ++ +  G      G+   V   
Sbjct: 2216 LTEAQIGQLAFDCYDTILNGTNDITRNPFINWNGNFTRVSSSNPGVYLDPSGICSSVKCM 2275

Query: 183  CGQRVCPNGYNGQKCQQLEVDKEPPRVDRCPGDLWVIAKNGSSIVNW-DAPV-FSDNVGV 356
             G++   N YN       + D+ PP V RCP ++        + V W D  V F DN+GV
Sbjct: 2276 FGRQAKANNYNSTG--SCDKDRLPPTVLRCPKNIRKGTTEDFTKVEWPDEDVAFFDNIGV 2333

Query: 357  AKVVEKSGHKPGENLAWGXXXXXXXXXXXVGNAATCTFKITVLSEFCPPLPDPLGGYQSC 536
             ++ E + H  G+    G            GN+A CTF +T+  + CP      GG    
Sbjct: 2334 IRI-EVNYHN-GQQFGVGITTVRYVGFDAAGNSAECTFDVTIYQKSCPSQVYAEGGTVLA 2391

Query: 537  RDW-GAGGQFKVCEIACRDGLRFSQPVPPFFTCGAEGFWR--PTSDPSLPLIY-PACSPA 704
              +  A    K  ++ C D L  +   P F+ C   G ++    SD +  + Y PAC   
Sbjct: 2392 MQFTTAPFTAKAEKVKCDDNLYPTDSRPMFYVCDIMGDYQYGGWSDNTKQIYYLPACGQT 2451

Query: 705  SPA 713
            SPA
Sbjct: 2452 SPA 2454


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
 Frame = +3

Query: 144  DIIGGVERIVPSHCGQRVCPNGYNGQKCQQLEVDKEPPRVDRCP-GDLWV-IAKNGS-SI 314
            D++G V    PSH        G+NG   Q   VD EPP+ + CP  +++  + +NG    
Sbjct: 1081 DLMGCVAPASPSHELDSHLQIGWNGSVPQC--VDMEPPKFENCPESEIFAKVDENGQLKA 1138

Query: 315  VNWDAPVFSDNVG-VAKV-VEKSGHKPGENLAWGXXXXXXXXXXXVGNAATCTFKITV 482
            V ++ P  SDN G +A   +E  G + G  +               GN A C  KI +
Sbjct: 1139 VEFEEPAASDNSGKIAYTQIEPLGMRTGLMIT-EDMDVTYTAFDSAGNTAVCVLKIRI 1195



 Score = 32.7 bits (71), Expect = 0.28
 Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 2/99 (2%)
 Frame = +3

Query: 447  GNAATCTFKITVLSEFCPPLPDPLGGYQSCRDWGAGGQFKVCEIACRDGLRFSQP--VPP 620
            GN  +C F++    E C P        Q  ++        VC + C  G RF  P  +  
Sbjct: 1266 GNRNSCKFQVAYAPEACSP-ASLASSNQIVKNCVHEEGAVVCSVYCAQGYRFVDPDQITQ 1324

Query: 621  FFTCGAEGFWRPTSDPSLPLIYPACSPASPAQRVFKVSM 737
             F C  +G W P ++       PAC P       F V++
Sbjct: 1325 NFVC-KDGRWSPRNNA------PACVPIPKDPAGFHVNV 1356


>AF025466-5|AAB71031.2|  428|Caenorhabditis elegans Nematode astacin
           protease protein27 protein.
          Length = 428

 Score = 35.5 bits (78), Expect = 0.040
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQLEVDKEPPRVDR-CPGDLW 287
           PS C Q VCP+G+ G  C+ +E      + +  C G LW
Sbjct: 273 PSDCSQCVCPDGFGGNFCETIEAHSVGQKDNSDCGGVLW 311


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 34.7 bits (76), Expect = 0.070
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQLEVDKEPPRVDRCPGDLWVIAKNGSSIVNW 323
           P++CGQ  CP G  G  C++L+       + R       I+ +GSS   W
Sbjct: 402 PNNCGQCTCPTGLEGTYCERLQTSNCGVELPRADYSWRNISYSGSSDCYW 451


>Z92829-4|CAD54131.1|  569|Caenorhabditis elegans Hypothetical
           protein F10A3.4 protein.
          Length = 569

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 15/24 (62%), Positives = 18/24 (75%)
 Frame = -1

Query: 382 CPDFSTTFATPTLSLNTGASQLTI 311
           CPD + T  TPT +L TGA+QLTI
Sbjct: 22  CPDAAITVQTPTGNLPTGATQLTI 45


>AJ561221-1|CAD99221.1|  302|Caenorhabditis elegans NAS-33 protein
           protein.
          Length = 302

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQLEVDK---EPPRVD 266
           P++CGQ  CP G  G  C++L+      E PR D
Sbjct: 256 PNNCGQCTCPTGLEGTYCERLQTSNCGVELPRAD 289


>Z72503-1|CAA96596.2|  617|Caenorhabditis elegans Hypothetical
           protein C26C6.3 protein.
          Length = 617

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +3

Query: 153 GGVERIVPSHCGQRVCPNGYNGQKCQQLEVDK 248
           GG  R  PS C + +CP+G  G+KC++ E  K
Sbjct: 335 GGYMR--PSKCSECLCPDGLGGEKCEKNEDSK 364


>Z78415-9|CAI58633.1|  685|Caenorhabditis elegans Hypothetical
           protein C17G1.6b protein.
          Length = 685

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQLE 239
           P++CG+  CP+GY G  C+ +E
Sbjct: 325 PNNCGRCRCPSGYGGTYCETVE 346


>Z78415-8|CAB01675.2|  765|Caenorhabditis elegans Hypothetical
           protein C17G1.6a protein.
          Length = 765

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQLE 239
           P++CG+  CP+GY G  C+ +E
Sbjct: 325 PNNCGRCRCPSGYGGTYCETVE 346


>AY912076-1|AAX81408.1|  685|Caenorhabditis elegans extracellular
           matrix metalloproteaseprotein.
          Length = 685

 Score = 31.5 bits (68), Expect = 0.65
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQLE 239
           P++CG+  CP+GY G  C+ +E
Sbjct: 325 PNNCGRCRCPSGYGGTYCETVE 346


>Z74042-2|CAA98528.2|  379|Caenorhabditis elegans Hypothetical
           protein T11F9.3 protein.
          Length = 379

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQLE 239
           P++C + +C +G+NGQ C Q E
Sbjct: 226 PANCEECLCTDGFNGQLCDQHE 247


>AJ561210-1|CAD99212.1|  151|Caenorhabditis elegans NAS-20 protein
           protein.
          Length = 151

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQLE 239
           P++C + +C +G+NGQ C Q E
Sbjct: 69  PANCEECLCTDGFNGQLCDQHE 90


>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
            K08C7.3b protein.
          Length = 3672

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 177  SHCGQRVCPNGYNGQKCQQLEVDKEPPRVDRCPGDLWVIAK 299
            S CG + C N   G +C   +++ E    DRC  D W  +K
Sbjct: 1993 SQCGSQYCDNKSGGCEC---KINVEGDSCDRCKPDHWGFSK 2030


>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
            K08C7.3a protein.
          Length = 3704

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 177  SHCGQRVCPNGYNGQKCQQLEVDKEPPRVDRCPGDLWVIAK 299
            S CG + C N   G +C   +++ E    DRC  D W  +K
Sbjct: 1993 SQCGSQYCDNKSGGCEC---KINVEGDSCDRCKPDHWGFSK 2030


>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
            chain protein.
          Length = 3704

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 177  SHCGQRVCPNGYNGQKCQQLEVDKEPPRVDRCPGDLWVIAK 299
            S CG + C N   G +C   +++ E    DRC  D W  +K
Sbjct: 1993 SQCGSQYCDNKSGGCEC---KINVEGDSCDRCKPDHWGFSK 2030


>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
            protein.
          Length = 3704

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 177  SHCGQRVCPNGYNGQKCQQLEVDKEPPRVDRCPGDLWVIAK 299
            S CG + C N   G +C   +++ E    DRC  D W  +K
Sbjct: 1993 SQCGSQYCDNKSGGCEC---KINVEGDSCDRCKPDHWGFSK 2030


>Z74042-7|CAA98532.1|  155|Caenorhabditis elegans Hypothetical
           protein T11F9.8 protein.
          Length = 155

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQ 233
           PS+C Q  CP G+ G  C Q
Sbjct: 40  PSNCSQCNCPYGFGGADCSQ 59


>U39848-1|AAT81210.1| 1338|Caenorhabditis elegans Latrophilin
           receptor protein 2 protein.
          Length = 1338

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 165 RIVPSHCGQRVCPNGYNGQKCQQLEVDKEPPRVDRCPG 278
           +I   +  Q  CPNGY GQ C+      +     R  G
Sbjct: 198 QIQAKYVAQCSCPNGYGGQTCETQSTTNQQASTQRTCG 235


>U00036-3|AAT92065.1|  529|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform b protein.
          Length = 529

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQL 236
           P  C +  CP+G+ GQ C+Q+
Sbjct: 343 PRRCDRCRCPDGFTGQYCEQV 363


>U00036-2|AAK29859.1|  592|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 31, isoform a protein.
          Length = 592

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQL 236
           P  C +  CP+G+ GQ C+Q+
Sbjct: 343 PRRCDRCRCPDGFTGQYCEQV 363


>AY314772-1|AAQ84879.1| 1338|Caenorhabditis elegans latrophilin-like
           protein LAT-2 protein.
          Length = 1338

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 165 RIVPSHCGQRVCPNGYNGQKCQQLEVDKEPPRVDRCPG 278
           +I   +  Q  CPNGY GQ C+      +     R  G
Sbjct: 198 QIQAKYVAQCSCPNGYGGQTCETQSTTNQQASTQRTCG 235


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 198 CPNGYNGQKCQQL 236
           CP+GY G+KC+Q+
Sbjct: 613 CPSGYTGEKCEQI 625


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
           protein Y64G10A.7 protein.
          Length = 1651

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = +3

Query: 198 CPNGYNGQKCQQL 236
           CP+GY G+KC+Q+
Sbjct: 613 CPSGYTGEKCEQI 625


>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical protein
            C31E10.8 protein.
          Length = 1272

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 361  FATPTLSLNTGASQLTIDDPFL 296
            FATP+  LN     LT DDP++
Sbjct: 1142 FATPSKQLNLQRKDLTFDDPYI 1163


>Z74039-3|CAA98502.1|  410|Caenorhabditis elegans Hypothetical
           protein K03B8.3 protein.
          Length = 410

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQ 233
           PS C + +CP GY G  C +
Sbjct: 277 PSKCSECICPLGYGGVLCDR 296


>U41554-3|AAA83298.2|  745|Caenorhabditis elegans Nematode astacin
           protease protein38 protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = +3

Query: 174 PSHCGQRVCPNGYNGQKCQQL 236
           P++C    CP G +G+ C+Q+
Sbjct: 328 PNNCSMCACPEGLSGRYCEQV 348


>AC024810-16|AAO21412.2|  684|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform b protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 652 LQKPSAPHVKNGGTGCENRKPSRQAISQTLNWPP 551
           +Q P+AP V+N  +    R PSRQA   +   PP
Sbjct: 49  VQIPAAPIVENKSSRTRARTPSRQAELSSSGTPP 82


>AC024810-15|AAF60769.1|  741|Caenorhabditis elegans Cdt (s. pombe
           licensing factor)homolog protein 1, isoform a protein.
          Length = 741

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 652 LQKPSAPHVKNGGTGCENRKPSRQAISQTLNWPP 551
           +Q P+AP V+N  +    R PSRQA   +   PP
Sbjct: 49  VQIPAAPIVENKSSRTRARTPSRQAELSSSGTPP 82


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
            protein C36B7.5b protein.
          Length = 1148

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/60 (26%), Positives = 22/60 (36%)
 Frame = +3

Query: 540  DWGAGGQFKVCEIACRDGLRFSQPVPPFFTCGAEGFWRPTSDPSLPLIYPACSPASPAQR 719
            DW    Q+ VC  +C +G R  +   P   CG           S P + P C      +R
Sbjct: 1080 DWTRWSQWSVCTASCGEGRRMRRRRCP---CGESKCGAGVDADSEPCVSPPCQAGHSERR 1136


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
            protein C36B7.5a protein.
          Length = 1121

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 16/60 (26%), Positives = 22/60 (36%)
 Frame = +3

Query: 540  DWGAGGQFKVCEIACRDGLRFSQPVPPFFTCGAEGFWRPTSDPSLPLIYPACSPASPAQR 719
            DW    Q+ VC  +C +G R  +   P   CG           S P + P C      +R
Sbjct: 1053 DWTRWSQWSVCTASCGEGRRMRRRRCP---CGESKCGAGVDADSEPCVSPPCQAGHSERR 1109


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,279,027
Number of Sequences: 27780
Number of extensions: 398837
Number of successful extensions: 1241
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 1096
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1239
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -