Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1100
(617 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 120 2e-28
SPAC9E9.14 |vps24||vacuolar sorting protein Vps24|Schizosaccharo... 63 3e-11
SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom... 38 0.002
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar... 27 1.6
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c... 27 2.9
SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc... 26 5.0
SPAC1142.07c |vps32|snf7|vacuolar sorting protein Vps32|Schizosa... 25 6.6
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha... 25 6.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 6.6
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 25 8.8
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 8.8
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 120 bits (289), Expect = 2e-28
Identities = 54/126 (42%), Positives = 85/126 (67%)
Frame = +2
Query: 236 MMEWLFGHKMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMDAV 415
+ WLFG +P E LR +QR+L +A R+LDRER K++Q+E+ +I +IK AK G A
Sbjct: 3 LTSWLFGGGKSPQEQLRAHQRSLGRAERELDRERTKLDQRERALIQEIKGSAKAGNTGAA 62
Query: 416 KIMAKDLVRTRRYVRKFMLMKANIQAVSLKIQTLKSQSTMAQAMKGVTRAMATMNRQLNM 595
+I A+DL+R R +K M K +QA+SL++QT+++ M Q+M+G TR + MN+ +N+
Sbjct: 63 RIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMRTSEQMMQSMRGATRLLTGMNKSMNI 122
Query: 596 PQIQKI 613
P + +I
Sbjct: 123 PAMARI 128
>SPAC9E9.14 |vps24||vacuolar sorting protein
Vps24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 63.3 bits (147), Expect = 3e-11
Identities = 31/117 (26%), Positives = 63/117 (53%)
Frame = +2
Query: 266 TPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMDAVKIMAKDLVRT 445
TP E RK Q + K R LDR+ ++ KK +K+LAK+ + ++I+AK++ R
Sbjct: 12 TPQEQNRKWQSIIRKEQRQLDRQVYHLKAGRKKAEVQLKQLAKQSDITNMRILAKEIARA 71
Query: 446 RRYVRKFMLMKANIQAVSLKIQTLKSQSTMAQAMKGVTRAMATMNRQLNMPQIQKIL 616
R+ ++ KA + ++SL++ + + M+ T+ M ++ + +PQ+ + +
Sbjct: 72 NRHGKRLAESKALLGSLSLQLNDQMAMLKIQGTMQSSTKIMQDVSSLIRLPQLSETM 128
>SPBC13G1.12 |did2||vacuolar sorting protein
Did2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 178
Score = 37.5 bits (83), Expect = 0.002
Identities = 17/74 (22%), Positives = 38/74 (51%)
Frame = +2
Query: 395 EGQMDAVKIMAKDLVRTRRYVRKFMLMKANIQAVSLKIQTLKSQSTMAQAMKGVTRAMAT 574
+G + +I A + +R ++ + + + I AVS ++QT + ++ M GV R M
Sbjct: 20 KGNSEIARIYASNAIRKQQESLNLLKLSSRIDAVSSRLQTAVTMRAVSGNMAGVVRGMDR 79
Query: 575 MNRQLNMPQIQKIL 616
+ +N+ I +++
Sbjct: 80 AMKTMNLEMISQVM 93
>SPBC4B4.04 |||translation initiation factor eIF2A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 576
Score = 27.5 bits (58), Expect = 1.6
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = +2
Query: 287 KNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQM 406
K R+L K +R +D + ++ EK +KK+ EG++
Sbjct: 524 KKIRSLCKKLRAIDDLKSRLNNNEKLEATQVKKIESEGKV 563
>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 339
Score = 26.6 bits (56), Expect = 2.9
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 412 C*NHGKRLSTYQTICPQVHVNESEHPSGVTEDTNSQVS--EHHGAGDEGSHSC 564
C + R+ +T+C +V E + + +TED+N ++ + G+ +H C
Sbjct: 238 CKDGNVRIFKVETLCEEVFQEEEDAGNSMTEDSNFNLNSLKVELIGEYDNHKC 290
>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
Nop10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 64
Score = 25.8 bits (54), Expect = 5.0
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 418 NHGKRLSTYQTICPQVHVNESEHPSGVTED 507
+ GKR+ T + + P V +S HP+ + D
Sbjct: 9 DEGKRVYTLKKVSPDGRVTKSSHPARFSPD 38
>SPAC1142.07c |vps32|snf7|vacuolar sorting protein
Vps32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 6.6
Identities = 18/95 (18%), Positives = 44/95 (46%), Gaps = 3/95 (3%)
Frame = +2
Query: 341 KMEQQEKKVIADIKKLAKEGQMDAVKIMAKDLVRTRRYVRKFMLMKA---NIQAVSLKIQ 511
K E+ ++ IA+ ++A++ ++ L R + + + + ++ NI+ IQ
Sbjct: 33 KKEEVLERQIAEQTEIARKNATTNKRLALTALKRKKMHENELVKIEGSRNNIEQQLFSIQ 92
Query: 512 TLKSQSTMAQAMKGVTRAMATMNRQLNMPQIQKIL 616
QAM+ AM ++ R ++ ++ +I+
Sbjct: 93 NANLNFETLQAMRQGAEAMKSIQRGMDADKVDQIM 127
>SPBC428.18 |cdt1||replication licensing factor
Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 444
Score = 25.4 bits (53), Expect = 6.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +2
Query: 401 QMDAVKIMAKDLVRTRRYVRKFMLMKANIQAVSLKIQTLKSQST 532
Q+ A+ ++K+ V VRK L K+ + + + QTL+ + T
Sbjct: 206 QLQALPSLSKNTVNESSLVRKLNLEKSTSRELRIPTQTLEPKFT 249
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 6.6
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 341 KMEQQEKKVIADIKKLAKEGQMDAVKIMAKDLVRTRRYVRKFMLMKANIQ 490
+ E + K+IA K + V+ ++ +L RT+ +R L K+NIQ
Sbjct: 921 RQENLQSKLIAANKDTTQNPDNVEVEAISIELERTKEKLRMAELEKSNIQ 970
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = +2
Query: 257 HKMTPDEMLRKNQRALNKAMRDLDRERMKMEQQEKKVIADIKKLAKEGQMDAVK 418
HK+T ++L + +NK+ + L+ + ++ +K+ A K+ +EG K
Sbjct: 156 HKLTFQKLLGRGNSTINKSAQKLNNQPIEKSSVDKE-NAKRKRYVEEGTKQGQK 208
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Frame = +2
Query: 287 KNQRALNKAMRDLDRERMKME------QQEKKVIADIKKLAKEGQMDAVKIMAKDLVRTR 448
+ QRA + +R + ER+K E +QEKK+ K AK +M ++ + K+ +R +
Sbjct: 81 QKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAK--KMKELEKLEKERIRLQ 138
Query: 449 RYVRK 463
R+
Sbjct: 139 EQQRR 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,391,094
Number of Sequences: 5004
Number of extensions: 45104
Number of successful extensions: 130
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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