Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1099
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0011 - 7337618-7338496,7338596-7338991 38 0.008
11_01_0767 + 6438648-6438809,6439146-6440000 38 0.008
11_01_0750 - 6315126-6315896,6316371-6316784 37 0.020
01_06_0824 - 32243495-32244319,32244449-32244859 32 0.56
11_01_0771 + 6453130-6454488 30 1.7
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 29 3.9
06_03_1214 + 28469848-28473048 29 5.2
12_01_0548 + 4394182-4394313,4394395-4394517 28 6.9
03_06_0124 - 31830797-31831371,31831510-31831532,31832143-318322... 28 6.9
06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764 28 9.1
04_04_1528 + 34172149-34172233,34172335-34172414,34172621-341726... 28 9.1
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 37.9 bits (84), Expect = 0.008
Identities = 37/150 (24%), Positives = 59/150 (39%), Gaps = 6/150 (4%)
Frame = +1
Query: 313 GQLGFTLNLFNTINDA--VPDDNIFFSPFSVYHSLLLAYLSSGGQTEE---ALRKSLEIE 477
G F L L + D + N+ FSP S+Y +L L + G T + AL + ++
Sbjct: 10 GMTAFALRLAKRLADVGVSSNKNLVFSPASLYAALALVAAGARGTTLDELLALLGAASLD 69
Query: 478 DGLDKINLMTAYKV-DKRARGINNNSDSYEFTSANKLFAADDLNVRQCMLDLFAEDLETL 654
D + + + D+ A G SD+ L R +
Sbjct: 70 DLEESVRRAVEVGLADESASGGPRVSDACGVWHDETLELKPAY--RAAAAGTYKAVTRAA 127
Query: 655 NFRENPGAARDYINSWVSRVTKNHISDLIP 744
NF+ P +R IN WVS+ T I +++P
Sbjct: 128 NFQRQPKRSRKKINKWVSKATNKLIPEILP 157
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 37.9 bits (84), Expect = 0.008
Identities = 16/44 (36%), Positives = 28/44 (63%)
Frame = +1
Query: 610 RQCMLDLFAEDLETLNFRENPGAARDYINSWVSRVTKNHISDLI 741
R ++ + T++F+ +P AR IN+WV+R TKN I+++I
Sbjct: 35 RDAIVGTYKGAASTVDFKNHPVEARKEINAWVARATKNLITEVI 78
>11_01_0750 - 6315126-6315896,6316371-6316784
Length = 394
Score = 36.7 bits (81), Expect = 0.020
Identities = 42/158 (26%), Positives = 64/158 (40%), Gaps = 9/158 (5%)
Frame = +1
Query: 301 ALYNGQLGFTLNLFNTINDAVPDDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIED 480
AL Q F L L + A N S +V+ SL LA + G T + ++L
Sbjct: 9 ALAAAQRAFCLPLAGRVLAAAGTGNAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGG 68
Query: 481 G-----LDKINLMTAYKVDKRARGINNNSDSYEFTSANKLFAADDLNVRQCMLDL----F 633
G D N+ A +V KR + S A ++A ++ + L +
Sbjct: 69 GGRGGAADAANV--ASRVVKRVLRDRSTSGGPRLAFAGGVWADASRSLSPEFVGLAGNVY 126
Query: 634 AEDLETLNFRENPGAARDYINSWVSRVTKNHISDLIPA 747
+ +F+ P A D INSWV TK ++ L+PA
Sbjct: 127 GSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLLPA 164
>01_06_0824 - 32243495-32244319,32244449-32244859
Length = 411
Score = 31.9 bits (69), Expect = 0.56
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 6/132 (4%)
Frame = +1
Query: 367 DDNIFFSPFSVYHSLLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTAYKV----DKRAR 534
D N+ SP S++ +L L + G+T + + L G L + + D
Sbjct: 31 DKNLAVSPLSLHAALALLGAGARGETLDQIIAFLGPAGGPAHAALASHVALCSLADDSGP 90
Query: 535 GINNNSDSYEFTSANKLFAADDLNVR--QCMLDLFAEDLETLNFRENPGAARDYINSWVS 708
G + F + + AA L + + D + + ++FR+ AR IN W
Sbjct: 91 GDDRGGPKVRFANGVWVDAALRLKAAYARVVADKYRAEARPVSFRDKLEEARREINEWFE 150
Query: 709 RVTKNHISDLIP 744
T I D +P
Sbjct: 151 SATAGRIKDFLP 162
>11_01_0771 + 6453130-6454488
Length = 452
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 595 DDLNVRQCMLDLFAEDLETLNFRENPGAARDYINSWVSRVTKNHISDLIP 744
D + QC+LDL +E E AR IN+W R T I+D++P
Sbjct: 154 DPSMIDQCVLDLVSEKAE---------EARKQINAWARRATGKLITDVLP 194
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = +1
Query: 178 DIIRTTMLRCLIVVLFVVSTVTSQCFYKDDSSKKL 282
D + TT +R L V+ VVS T CF DDS+ K+
Sbjct: 79 DGVETTNVRVLGRVVSVVSRDTDVCFTLDDSTGKI 113
>06_03_1214 + 28469848-28473048
Length = 1066
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +1
Query: 133 NLPARRTTVTCTPLEDIIRTTMLRCLIVVLFVVSTVTSQCFYKDDSS 273
NLP ++ T T + R L+++L ++ TS C +++SS
Sbjct: 5 NLPCSSSSSTTTTTTTKLSVAFFRLLVILLLSFASPTSSCTEQEESS 51
>12_01_0548 + 4394182-4394313,4394395-4394517
Length = 84
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 43 FKANRIIIHNKIILYSIIFQVLDDFT*FSTNLPARRTTVTCTPLEDI 183
FKA R ++HN I +VL++F +S + A+ T + + D+
Sbjct: 10 FKAERYVLHNPKSFNDIFIRVLEEFVCWSYSFIAQVTRKGSSVISDL 56
>03_06_0124 -
31830797-31831371,31831510-31831532,31832143-31832271,
31833287-31834842
Length = 760
Score = 28.3 bits (60), Expect = 6.9
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 409 LLLAYLSSGGQTEEALRKSLEIEDGLDKINLMTAYKV 519
L+ Y++ G T RKS++ E+GL ++ +T K+
Sbjct: 461 LVYKYMAKGDLTSALHRKSVDAEEGLRSLDWITRLKI 497
>06_01_1135 - 9379361-9381018,9381356-9381665,9381811-9382764
Length = 973
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/59 (32%), Positives = 27/59 (45%)
Frame = +1
Query: 433 GGQTEEALRKSLEIEDGLDKINLMTAYKVDKRARGINNNSDSYEFTSANKLFAADDLNV 609
G +TE A + +E GLD ++ V+K I + Y FT K DDLN+
Sbjct: 511 GSKTEAAAVLANIVESGLDPDTIV----VNKEGHVITSKYSVYNFTHMLKCSMPDDLNL 565
>04_04_1528 +
34172149-34172233,34172335-34172414,34172621-34172689,
34172780-34172837,34173296-34173357,34173441-34173554,
34173862-34173964,34174085-34174134,34174335-34174724,
34174918-34175244,34175360-34175689
Length = 555
Score = 27.9 bits (59), Expect = 9.1
Identities = 21/59 (35%), Positives = 33/59 (55%)
Frame = -2
Query: 479 SSISKDFLRASSVCPPDERYASSNEWYTEKGEKNMLSSGTASLIVLKRFNVNPSWPLYK 303
+ IS+D L A +V P E AS+N + ++ G+K L S T+ + LK+ + PL K
Sbjct: 87 NEISQDTL-AHAVRHPSELPASANWFNSKSGKKIPLRSVTSIIDGLKKSYIEKLRPLEK 144
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,341,238
Number of Sequences: 37544
Number of extensions: 383666
Number of successful extensions: 968
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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