Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1098
         (316 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    27   0.89 
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    25   2.7  
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc...    25   2.7  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   2.7  
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-...    25   3.6  
SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces pom...    24   4.7  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    24   6.3  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    23   8.3  

>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.6 bits (56), Expect = 0.89
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 113 SLGPPPLVTVLSVRNMFSLFIAGVRGLL 196
           SLG P    + ++ N+ SLF+AGV   L
Sbjct: 52  SLGLPEYSNLFAINNLKSLFVAGVPNYL 79


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -1

Query: 274 HCNYTETLELISQGGWRI 221
           HC Y+  +E+ +  GW+I
Sbjct: 667 HCPYSYCMEITNSSGWKI 684


>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -1

Query: 265 YTETLELISQGGWRIHVVDVYGLQ*PPNASNK*RKHVSDGEDCYKG 128
           Y+ +      G W  +  + Y      NASNK RK   +G   + G
Sbjct: 135 YSRSRRSAGMGSWEEYYYNSYDYMNDQNASNKNRKFDDEGMLVFAG 180


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.0 bits (52), Expect = 2.7
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 203 IDIDNVDAPPTLRYKF*GLGIVTMAAPPIKLERITAS 313
           +D   +DAP  L  KF  LG+ ++ +    L+  T S
Sbjct: 297 VDTPGIDAPSDLEAKFSDLGVSSVVSVTSPLQSCTNS 333


>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
           L-lysine forming] |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 368

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 124 PPPCNSPLRQKHVFFIYCWR 183
           P   NSPL+  H+ F +C++
Sbjct: 80  PENDNSPLKHTHIQFAHCYK 99


>SPAC222.13c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 592

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -1

Query: 259 ETLELISQGGWRIHVVDVYGLQ*PPNASNK*RKHVSD 149
           ETLE +    W IH   V G+    N++++ RKH+ D
Sbjct: 215 ETLEDLLH--WMIHENGVIGILDATNSTHERRKHLYD 249


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 166 RKHVSDGEDCYKGGGPQ 116
           R H  D +D YK G PQ
Sbjct: 8   RNHAPDWQDFYKNGVPQ 24


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 237 KVGGASTLSMSMDFSNPLTPAINKENMFLTERTVT 133
           K+G + TLS S++F+ P    +N     L E + T
Sbjct: 493 KLGPSWTLSDSLEFAAPYQSELNNYLKTLAEASAT 527


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,420,239
Number of Sequences: 5004
Number of extensions: 27714
Number of successful extensions: 51
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)