Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1098
(316 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600 30 0.33
03_02_0675 - 10333083-10333740,10334910-10335039,10335218-10335350 28 1.8
06_01_1007 + 7846266-7846526,7848368-7848420,7849231-7849432,784... 27 3.1
04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608... 27 3.1
02_03_0262 + 17015383-17015619,17017932-17018879 27 3.1
01_06_0920 - 33009183-33009335,33009421-33009741,33010221-330103... 27 3.1
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 27 4.1
02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665 27 4.1
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397... 26 5.4
08_02_0311 - 15635165-15635590,15635777-15638698 26 5.4
03_06_0358 + 33366265-33366447,33367371-33367468,33367910-333689... 26 5.4
03_03_0262 + 15968884-15969687 26 5.4
03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380 26 5.4
03_01_0083 - 667530-667837,668092-668224 26 5.4
02_03_0036 + 14186407-14186566,14188241-14188548 26 5.4
07_03_1728 + 29076733-29079069 26 7.1
03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097 26 7.1
03_02_1007 + 13160772-13161311 26 7.1
10_08_0975 - 21978642-21979520 25 9.4
>11_01_0305 + 2299681-2299860,2299940-2300260,2300346-2300600
Length = 251
Score = 30.3 bits (65), Expect = 0.33
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -3
Query: 263 YRDLRTYISRWVAHPRCRC 207
+R L T + W AHPRCRC
Sbjct: 118 WRVLTTALPPWEAHPRCRC 136
>03_02_0675 - 10333083-10333740,10334910-10335039,10335218-10335350
Length = 306
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 76 SISNEAVRPGGSLAGAPPPCNSPLRQKHVFFIYCWR*GVTEVHRHRQRGCATHLE 240
SI A+RP + APPPC P+ +F H+H+Q+ TH++
Sbjct: 135 SIGTLAIRPPPAAGAAPPPC-LPVFHDAPYF-------AALQHQHQQQQVVTHVD 181
>06_01_1007 +
7846266-7846526,7848368-7848420,7849231-7849432,
7849526-7849609,7850005-7850188,7850605-7850741,
7850875-7850939,7851093-7851762
Length = 551
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = -2
Query: 240 LKVGGASTLSMSMDFSNPLTPAINKENM 157
L +GG + + D S+PL+P++ KE++
Sbjct: 118 LSMGGQDVVYVKQDKSSPLSPSVIKEHL 145
>04_03_0459 +
16159015-16159771,16160251-16160365,16160478-16160844,
16160930-16161244,16161324-16161644,16161730-16161882
Length = 675
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 263 YRDLRTYISRWVAHPRCRC 207
+R L T + W A PRCRC
Sbjct: 576 WRVLTTALPPWEARPRCRC 594
>02_03_0262 + 17015383-17015619,17017932-17018879
Length = 394
Score = 27.1 bits (57), Expect = 3.1
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = -2
Query: 162 NMFLTERTVTRGGGPSERASGT-DRLVTY*DNLIAIETKWD 43
+MF+ R RGG S++ +G ++ + DN +A+E K D
Sbjct: 285 DMFVPYRKKDRGGSSSKQQAGAEEKEILPQDNAVAMEEKMD 325
>01_06_0920 -
33009183-33009335,33009421-33009741,33010221-33010343,
33010476-33010634,33010720-33011086,33011162-33011315,
33011782-33012874
Length = 789
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -3
Query: 263 YRDLRTYISRWVAHPRCRC 207
+R L T + W A PRCRC
Sbjct: 690 WRVLTTALPPWEARPRCRC 708
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -1
Query: 154 SDGEDCYKGGGPQRASLRDGPP 89
S+GE+C GG P AS +GPP
Sbjct: 15 SNGEECTDGGHPNSAS-GNGPP 35
>02_05_0188 + 26587267-26587446,26587733-26587979,26588358-26588665
Length = 244
Score = 26.6 bits (56), Expect = 4.1
Identities = 10/15 (66%), Positives = 13/15 (86%)
Frame = -2
Query: 135 TRGGGPSERASGTDR 91
++ GGPS+RA GTDR
Sbjct: 229 SKKGGPSKRAKGTDR 243
>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
3973665-3973982,3974565-3974763,3974937-3975202,
3975288-3975574,3976714-3977818,3977900-3978046,
3978146-3978226,3978315-3978540,3978622-3978761,
3979539-3979645,3979739-3979841
Length = 3638
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = +2
Query: 173 IAGVRGLLKSIDIDNVDAPPTLRYKF*GLGIVTMAA 280
+ + GLLK ID+D+ DAP + L +T A
Sbjct: 1895 VQSLSGLLKVIDLDHPDAPKVVNLILKALDSLTRTA 1930
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +1
Query: 97 RPGGSLAGAPPPCNSPLRQKHVFFIYCWR*GVTE 198
RP G+L PP + P + V I CW TE
Sbjct: 799 RPSGALTVPRPPLDPPTVAEAVSVISCWYEDKTE 832
>03_06_0358 +
33366265-33366447,33367371-33367468,33367910-33368945,
33369042-33369554,33370456-33370644,33370715-33370848,
33371196-33371358
Length = 771
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 140 VLSVRNMFSLFIAGVRGLLKSIDIDNV 220
+LSVRN+ S A +RGL + + ID++
Sbjct: 106 LLSVRNLLSTQSALIRGLSEGVHIDSL 132
>03_03_0262 + 15968884-15969687
Length = 267
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 82 SNEAVRPGGSLAGAPPP 132
S +AVR GG+ A PPP
Sbjct: 168 SQDAVRTGGAAAATPPP 184
>03_01_0155 - 1239184-1239491,1240414-1240812,1241017-1241380
Length = 356
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 126 GGPSERASGTDR 91
GGPS+RA GTDR
Sbjct: 344 GGPSKRAKGTDR 355
>03_01_0083 - 667530-667837,668092-668224
Length = 146
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = -2
Query: 156 FLTERTVTRG-GGPSERASGTDR 91
+LTE+ R GGPS+RA GT+R
Sbjct: 123 YLTEQIRRRKKGGPSKRAKGTNR 145
>02_03_0036 + 14186407-14186566,14188241-14188548
Length = 155
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 126 GGPSERASGTDR 91
GGPS+RA GTDR
Sbjct: 143 GGPSKRAKGTDR 154
>07_03_1728 + 29076733-29079069
Length = 778
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +2
Query: 95 SVPEARSLGPPPLVTVLSVRNMFSLFIAGVRGLLKSIDID 214
SV + PP V+S +M + ++GV L+KS+ D
Sbjct: 515 SVARTDAAAAPPSFNVISGTSMATPHVSGVAALVKSVHPD 554
>03_04_0222 + 18858255-18858437,18858586-18858772,18858820-18859097
Length = 215
Score = 25.8 bits (54), Expect = 7.1
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = -2
Query: 246 LYLKVGGASTLSMSMDFSNPLTPAINKENMFLTERTVTRGGGPSE 112
LY K G + + P TP KE+ F R T GGG +E
Sbjct: 87 LYTKAGDEELHNYITPTATPSTP---KEDWFCIRRVRTPGGGAAE 128
>03_02_1007 + 13160772-13161311
Length = 179
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Frame = +1
Query: 121 APPPCNSPLRQKHVFFIYC--WR*GVTE 198
APPP + R + ++ YC W+ GV E
Sbjct: 22 APPPVSVAARPQAPYYYYCHGWKEGVAE 49
>10_08_0975 - 21978642-21979520
Length = 292
Score = 25.4 bits (53), Expect = 9.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 140 LLQGGGAPASEPPGRTASLLIETI*LRLKP 51
+++GGG A +PP R+ S L + + +P
Sbjct: 146 VVRGGGVSAKDPPRRSTSWLSSIVRRKRRP 175
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,158,865
Number of Sequences: 37544
Number of extensions: 269659
Number of successful extensions: 793
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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