Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1098
         (316 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.60 
SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)                  28   1.4  
SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.4  
SB_50420| Best HMM Match : RelA_SpoT (HMM E-Value=0)                   27   4.2  
SB_30286| Best HMM Match : DUF321 (HMM E-Value=1.2)                    27   4.2  
SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)                  26   5.6  
SB_15403| Best HMM Match : CH (HMM E-Value=0)                          26   5.6  
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)                 26   7.4  
SB_58356| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_37557| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_34081| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.4  
SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)                   25   9.8  
SB_51951| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  
SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)                    25   9.8  

>SB_47824| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 507

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 28  VHHDHVPFGFNRN*IVSISNEAVRPGGSLAGAPPPCNSPLRQKHVFFIY 174
           +H   V +G +   + SI  E + PG    G P P    L   HV+++Y
Sbjct: 391 LHSSIVSYGQDPR-LASIIQEVLEPGSVQEGVPIPLEPALDTPHVYWLY 438


>SB_57013| Best HMM Match : Pico_P2A (HMM E-Value=3.2)
          Length = 474

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +1

Query: 118 GAPPPCNSPLRQK-HVFFIYCWR*GVTEVHRHRQRGCAT 231
           GAP P +SP  QK  VF  Y W  G   V  H  RGC T
Sbjct: 256 GAPLPGDSPFTQKGDVFVFYPWE-GYRNV--HVIRGCDT 291


>SB_29019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 646

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = -2

Query: 249 NLYLKVGGASTLSMSMDFSNPL-TPAINKENMFLTERTVTRGGGPSERASGTD 94
           +++ ++ G+S++SMS+  + P+ T A +  N+  T   +    G    ASGT+
Sbjct: 381 SIFSRILGSSSISMSLPPARPVTTTASSTPNVLTTSSPLLPRAGFGRTASGTN 433


>SB_50420| Best HMM Match : RelA_SpoT (HMM E-Value=0)
          Length = 278

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 106 GSLAGAPPPCNSPLRQKHVFFIYC 177
           G L  A  PC    R+KH++ IYC
Sbjct: 79  GRLQEAGIPCRVSGREKHLYSIYC 102


>SB_30286| Best HMM Match : DUF321 (HMM E-Value=1.2)
          Length = 237

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
 Frame = -2

Query: 285 GGAAIVTIPRP*NLYL----KVGGASTLSMSMDFSNPLTPAINKENMFLTERTVTR-GGG 121
           GGA  V +P+   LY+    K  G  T   SMD ++PL P    +++ L+   V++ G G
Sbjct: 129 GGALKVALPKIEALYICCDIKPAGGRTRKSSMDPTSPLVP----QHLPLSLSRVSKYGSG 184

Query: 120 PSERASGTDR 91
            +   SG  R
Sbjct: 185 MTGAISGNTR 194


>SB_18457| Best HMM Match : GPW_gp25 (HMM E-Value=2.7)
          Length = 577

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 112 LAGAPPPCNSPLRQKHV 162
           L  A PPC+SP+R  HV
Sbjct: 107 LLHATPPCDSPMRLPHV 123



 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 112 LAGAPPPCNSPLRQKHV 162
           L  A PPC+SP+R  HV
Sbjct: 81  LLHATPPCDSPMRLLHV 97


>SB_15403| Best HMM Match : CH (HMM E-Value=0)
          Length = 1907

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 94   VRPGGSLAGAPPPCNSPLRQKHVFFIYCWR*GVT--EVHRHRQRGCATHLEI*VLRSRY 264
            VR GG++   P P   PL +  V    C   G+T   + R R   C  +  + VL S Y
Sbjct: 1298 VRDGGAVCTCPDPAACPLVKSRV----CGTDGITYDNLCRLRAESCRRYQPVNVLHSGY 1352


>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
          Length = 768

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 100 PGGSLAGAPPPCNSPL 147
           PGG   GAPPP   PL
Sbjct: 668 PGGQAGGAPPPPPPPL 683


>SB_58356| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 104 EARSLGPPPLVTVLSVRNMFSLFIAGVRGLLKSIDIDNV 220
           E    G PP VT +S + M+      + GL K+ID++++
Sbjct: 39  EEEDPGTPPPVTYISPQRMYKDVSDILDGLAKAIDLNHL 77


>SB_37557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 641

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +2

Query: 104 EARSLGPPPLVTVLSVRNMFSLFIAGVRGLLKSIDIDNV 220
           E    G PP VT +S + M+      + GL K+ID++++
Sbjct: 119 EEEDPGTPPPVTYISPQRMYKDVSDILDGLAKAIDLNHL 157


>SB_34081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 112 LAGAPPPCNSPLRQKHV 162
           L  A PPC+SP+R  HV
Sbjct: 42  LLHATPPCDSPMRLLHV 58


>SB_35277| Best HMM Match : WIF (HMM E-Value=9.8e-06)
          Length = 587

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = -1

Query: 190 PPNASNK*RKHVSDGEDCYKGGGPQRASLRDGP 92
           P  + NK R  +SDG +   GG P + +    P
Sbjct: 322 PSPSQNKDRASISDGSELGHGGSPNKMASAKRP 354


>SB_51951| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -2

Query: 207 SMDFSNPLTPAINKENMFLTERTVTRGGGPSERASGTDRL 88
           S D S   +P I K      E  VTRG    ++A+ TD+L
Sbjct: 48  SRDSSRSHSPRITKSASTSMEDLVTRGPMMIDKATSTDQL 87


>SB_87| Best HMM Match : HSP90 (HMM E-Value=9.4e-10)
          Length = 739

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
 Frame = -1

Query: 160 HVSDGEDCYKGGGPQRASLRDG-----PPRYLLR 74
           HVSD   C     P   S RDG     PPR  LR
Sbjct: 676 HVSDVRQCSDSSRPDGGSTRDGRQTQHPPRKSLR 709


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,610,591
Number of Sequences: 59808
Number of extensions: 259276
Number of successful extensions: 496
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 496
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 400488992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)