Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1098
         (316 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical pr...    30   0.40 
U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeo...    27   3.8  
AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical ...    23   4.1  
AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical ...    23   4.1  
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr...    25   8.7  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    25   8.7  
AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical...    25   8.7  
AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    25   8.7  

>U80032-4|AAL16309.2| 1553|Caenorhabditis elegans Hypothetical protein
            C32E12.4 protein.
          Length = 1553

 Score = 29.9 bits (64), Expect = 0.40
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 75   LNK*RGGPSRRLARWGPPPL*QSSPSETCF 164
            LN+ +  P R + RW PPP   +SPS   F
Sbjct: 1246 LNQEKEAPKRTIRRWKPPPPDPTSPSFIAF 1275


>U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeobox
           protein 30 protein.
          Length = 299

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +1

Query: 7   NK*HLNDVHHDHVPFGFNRN*IVSISNEAVRPGGSLAGAPPPCNSPLRQKHVF 165
           N  H ND  HD  P     +   S S  A  PGG   G+P  C    + + +F
Sbjct: 116 NSSHSND--HDPSPQSIKSD--FSTSPRASSPGGDRMGSPGSCKKSRKARTIF 164


>AC006615-3|AAK68232.1| 1148|Caenorhabditis elegans Hypothetical
           protein C36B7.5b protein.
          Length = 1148

 Score = 22.6 bits (46), Expect(2) = 4.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 21  KRCSSRPCPIW 53
           + C  RPCP W
Sbjct: 438 RTCDKRPCPHW 448



 Score = 22.2 bits (45), Expect(2) = 4.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 27  CSSRPCPIWFQ 59
           C+ +PCP W Q
Sbjct: 488 CNQQPCPEWSQ 498


>AC006615-2|AAK68231.1| 1121|Caenorhabditis elegans Hypothetical
           protein C36B7.5a protein.
          Length = 1121

 Score = 22.6 bits (46), Expect(2) = 4.1
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +3

Query: 21  KRCSSRPCPIW 53
           + C  RPCP W
Sbjct: 438 RTCDKRPCPHW 448



 Score = 22.2 bits (45), Expect(2) = 4.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +3

Query: 27  CSSRPCPIWFQ 59
           C+ +PCP W Q
Sbjct: 488 CNQQPCPEWSQ 498


>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical protein
            W05B2.4 protein.
          Length = 2265

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 140  VLSVRNMFSLFIAGVRGLLKSIDIDN 217
            +  + +M S+ I GVRGLL  + ++N
Sbjct: 953  IQKINSMVSIIIQGVRGLLDGMRMNN 978


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +3

Query: 18  LKRCSSRPCPIWFQSQL 68
           L++C +R C IW  SQ+
Sbjct: 669 LRKCKNRQCEIWSTSQM 685


>AC025716-21|AAT39978.1|  586|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18b protein.
          Length = 586

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  HHDHVPFGFNRN*IVSISNEAVRPGGSLAGAPPP 132
           HH H     +R+  +S S++ +RP    A APPP
Sbjct: 145 HHHH-----HRSNSISHSSDVIRPSQPKATAPPP 173


>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 31  HHDHVPFGFNRN*IVSISNEAVRPGGSLAGAPPP 132
           HH H     +R+  +S S++ +RP    A APPP
Sbjct: 505 HHHH-----HRSNSISHSSDVIRPSQPKATAPPP 533


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,401,472
Number of Sequences: 27780
Number of extensions: 186642
Number of successful extensions: 441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)