Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1098
         (316 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR...    27   3.5  
At5g37600.1 68418.m04529 glutamine synthetase, putative similar ...    27   3.5  
At5g45150.1 68418.m05543 ribonuclease III family protein similar...    26   4.6  
At5g11990.1 68418.m01402 proline-rich family protein contains pr...    25   8.1  
At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family p...    25   8.1  
At3g14100.1 68416.m01782 oligouridylate-binding protein, putativ...    25   8.1  
At2g24170.1 68415.m02888 endomembrane protein 70, putative simil...    25   8.1  
At1g51860.1 68414.m05846 leucine-rich repeat protein kinase, put...    25   8.1  

>At5g41540.1 68418.m05048 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1038

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 131 LVTVLSVRNMFSLFIAGVRGLLKSIDIDNVD 223
           L   LS    F  F+  ++G  KSI +DN D
Sbjct: 225 LYNQLSTNFQFKCFMGNLKGSYKSIGVDNYD 255


>At5g37600.1 68418.m04529 glutamine synthetase, putative similar to
           glutamine synthetase, cytosolic isozyme (Glutamate--
           ammonia ligase, GS1) [Lotus japonicus] SWISS-PROT:Q42899
          Length = 356

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -1

Query: 292 FDGWGGHCNYTETLELISQGGWRI--HVVDVYGLQ 194
           ++G G HCNY+ T  +  +GG+ I    +D  GL+
Sbjct: 243 WNGAGAHCNYS-TKSMREEGGYEIIKKAIDKLGLR 276


>At5g45150.1 68418.m05543 ribonuclease III family protein similar to
           CAF protein (RNA helicase/RNAseIII) [Arabidopsis
           thaliana] GI:6102610; contains Pfam profiles PF00035:
           Double-stranded RNA binding motif, PF00636 RNase3 domain
          Length = 957

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -2

Query: 237 KVGGASTLSMSMDFSNPLTPAINKENMFLTERT 139
           ++    T S+ + F NPLT  + +E M + E +
Sbjct: 752 EISSTETSSLPIAFENPLTNELTQEQMVIDENS 784


>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +2

Query: 101 PEARSLGPPPLVTVL 145
           P ++SL PPPL+TV+
Sbjct: 79  PLSQSLSPPPLITVI 93


>At4g31370.1 68417.m04448 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like
           arabinogalactan-protein 1 [Arabidopsis thaliana]
           gi|13377776|gb|AAK20857
          Length = 278

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = +1

Query: 4   LNK*HLNDVHHDHVPFGFNRN*IVSISNEAVRPGGSLAGAPPP 132
           LN  +++ V+H+  P+  +   I+ I+   V PG SLA  PPP
Sbjct: 145 LNAEYVSTVYHN--PYNLS---IIQITMPIVAPGLSLAIFPPP 182


>At3g14100.1 68416.m01782 oligouridylate-binding protein, putative
           similar to GB:CAB75429 (GI:6996560) from [Nicotiana
           plumbaginifolia], contains Pfam profiles: PF00076 RNA
           recognition motif (3 copies)
          Length = 427

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 46  PFGFNRN*IVSISNEAVRPGGSLAGAPPPCNSPL 147
           P+ FNR    S  N+   PG +    PPP  +P+
Sbjct: 326 PYLFNRQIKCSWGNKPTPPGTASNPLPPPAPAPV 359


>At2g24170.1 68415.m02888 endomembrane protein 70, putative similar
           to  MURA transposase of maize Mutator transposon
          Length = 637

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 150 TERTVTRGGGPSERASGTDRLVTY*DNLIAIETKW 46
           T+R VT    P E   G + + TY  +    E KW
Sbjct: 224 TKRAVTNSESPQEVEEGNEIIFTYDVDFQESEVKW 258


>At1g51860.1 68414.m05846 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 890

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 83  VTRRSVPEARSLGPPPLVT 139
           + R++V   +S GPPPLVT
Sbjct: 534 IKRKNVKAHKSPGPPPLVT 552


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,031,370
Number of Sequences: 28952
Number of extensions: 181430
Number of successful extensions: 400
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)