Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1095
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos...    30   0.39 
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.51 
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    28   1.2  
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ...    27   2.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    27   2.7  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    26   4.8  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   6.3  
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi...    26   6.3  
SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory...    25   8.3  
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    25   8.3  
SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyce...    25   8.3  
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch...    25   8.3  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    25   8.3  

>SPBC947.13 |rba50||RNA polymerase II associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = -3

Query: 403 SIEVLQNHFINVFGFRWISASITHGASAPVQVLPHHHGDLP 281
           S+E L  H I  FGF+    + +   + PV    HHHGD P
Sbjct: 315 SVESLHAHEIR-FGFKGEIITPSQSQTIPVNEGLHHHGDAP 354


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +2

Query: 446 AAWFTQPHHKE--GFIMFLDHINQMPDVWIVTNWQ 544
           ++WF   H  E    I FL+H+ ++PDV  V N Q
Sbjct: 290 SSWFNDMHDMELIDLIPFLEHLARVPDVSTVLNLQ 324


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -2

Query: 254 TVVSYSRGIVYNREYKASWAVCFHTL 177
           + VS S  I+YNR+Y+ S A+ F TL
Sbjct: 12  STVSISNFILYNRKYRKSCALAFLTL 37


>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 391

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 344 KHHPWSIGPRSSLATSPWGPP 282
           KH P S+ P      SPW PP
Sbjct: 164 KHKPGSLIPAQQFGQSPWKPP 184


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 193  SVFIHWERRVVSEVRIVQHFEHFVSTN 113
            S+F+HW R   S +  +   E+F+  N
Sbjct: 1477 SIFVHWHRAYYSHLDYLTEVEYFIMGN 1503


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
            Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -2

Query: 83   HPQVLHHHKLQEFLVGQQLLCSISFEK 3
            H  VL   K  EF +GQ+LL    FEK
Sbjct: 1215 HIDVLELEKENEFTIGQKLLVKGRFEK 1241


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +2

Query: 161  YDSSLPVYENRPPSWPYTLDYKLFHDCMIPPCPTKSYPGVWEVPMVMWQDLNGGRCSMGD 340
            Y +SL  Y  +    PY     ++ +C+ P   T+SY G    P ++  DL   R  +  
Sbjct: 1197 YIASLQKYFVKHGLSPYAFS-TVYSNCLNPFISTRSYMGAIPTPQLL--DLRALRHGLIQ 1253

Query: 341  ACANPPEP 364
             C +  +P
Sbjct: 1254 PCESADKP 1261


>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
           Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 132 NILFPPTERNGALIPLTSSSFTPP*AARISRWP 34
           N+  P +  N  + P++ S + PP   + + WP
Sbjct: 287 NVYQPASNANQVITPVSISDYRPPKKRKRAAWP 319


>SPBC1289.01c |chr4|cfh3, SPBC1539.11c|chitin synthase regulatory
           factor |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 93  IPLTSSSFTPP*AARISRWPATS 25
           IP+T+S  +PP A  +S  P TS
Sbjct: 579 IPVTASETSPPHAPAVSSTPVTS 601


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 532 DYPHIRHLVDVIQEHNEAFLVVRLS 458
           ++P+I HLVD  +  N  +L+  L+
Sbjct: 87  EHPNILHLVDFFETVNNLYLITELA 111


>SPBC8D2.17 |||alpha-1,2-galactosyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 341 ACANPPEPENVYKMILKNFDRHYSTNRA 424
           A  +P +P++V  M++ +FD HY ++R+
Sbjct: 56  AKTSPQDPDSVV-MLIVSFDDHYDSSRS 82


>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
           oxidase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 461

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 352 ISASITHGASAPVQVLPHH 296
           I ++ THG+S   QVLPH+
Sbjct: 128 IMSTCTHGSSLQHQVLPHY 146


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = +2

Query: 137 MLYDSNFTYDSSLPVYENRP--PSWPYTLDYKLFHDCMIP 250
           + Y S F +  SL    N P  P W +  +Y+LF+  ++P
Sbjct: 508 LTYFSTFIFLCSLSKILNGPLVPFWLWAKEYELFNSWLMP 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,474,679
Number of Sequences: 5004
Number of extensions: 80792
Number of successful extensions: 236
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)