Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1095
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0383 - 3405986-3407359,3409283-3410827                           29   2.8  
06_03_0962 + 26351861-26351899,26353304-26353530,26355183-263554...    29   2.8  
11_06_0610 - 25449085-25453284                                         29   5.0  
05_03_0320 + 12353416-12353451,12353579-12353668,12353940-123540...    29   5.0  
09_01_0076 + 1105331-1105453,1106559-1106705,1107046-1107195,110...    28   6.6  
01_01_0796 + 6190931-6192745                                           28   6.6  
09_04_0189 + 15438538-15438591,15438671-15438891,15438982-154392...    28   8.7  

>08_01_0383 - 3405986-3407359,3409283-3410827
          Length = 972

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = -2

Query: 443  DRINRKVPCWCYSVYRSSSESFYKRFRVQVD*RKHHPWSIGPRSSLATSPWGPPKHLDRI 264
            D  NR++    YS  +S S+  +    +Q   +     S GP+  +  +P+G    + RI
Sbjct: 793  DLTNRRLGIKYYS--KSKSDYVHSPISMQDTIKIIEYLSNGPQGFIQLNPYGGA--MARI 848

Query: 263  -SSDTVVSYSRGIVYNREYKASW 198
             SS+    Y  G +Y+ EY  SW
Sbjct: 849  GSSELPFPYRAGYLYSIEYNVSW 871


>06_03_0962 +
           26351861-26351899,26353304-26353530,26355183-26355421,
           26356276-26356495,26358093-26358214,26358428-26358729,
           26358776-26358883,26359314-26359376,26359415-26359621,
           26359702-26359812,26359899-26360228
          Length = 655

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 421 GTFRFILSRGLVHSAAPQGRLHYVLGSHQPDAGCVD 528
           GT  + + RG+VH+    G +H++ G    + G +D
Sbjct: 601 GTCEYTMGRGVVHACHAGGVVHFLEGWDHHEVGAID 636


>11_06_0610 - 25449085-25453284
          Length = 1399

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 167  SSLPVYENRPPSWPYTLDYKLFHDCMIPPCPTKSYP 274
            SS P  E+ PP  P        H+  +PP P KS P
Sbjct: 906  SSPPSKESEPPPTPTPKSSPPSHEEYVPPSPAKSTP 941



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 167  SSLPVYENRPPSWPYTLDYKLFHDCMIPPCPTKSYP 274
            SS P  E+ PP  P        H+  +PP P KS P
Sbjct: 956  SSPPSEESEPPPSPTPKSSPPSHEEYVPPSPAKSTP 991


>05_03_0320 +
           12353416-12353451,12353579-12353668,12353940-12354026,
           12354156-12354224,12355179-12355313,12355746-12355826,
           12355908-12355979,12356071-12356131,12356234-12356336,
           12356448-12356543,12356620-12356666,12356747-12356871,
           12356962-12357036
          Length = 358

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 326 CSMGDACANPPEPENVYKMILKNFDR 403
           C  G A A  P P+NV +++L NF R
Sbjct: 188 CREGSALARLPHPQNVAEVLLINFPR 213


>09_01_0076 +
           1105331-1105453,1106559-1106705,1107046-1107195,
           1107272-1107531,1107897-1108084,1108187-1108311,
           1108485-1108521,1108802-1108893,1109023-1109133,
           1109242-1109352,1109576-1109669,1109833-1109945,
           1110316-1110411,1110510-1110617,1110665-1110814,
           1110910-1110990,1111205-1111276,1111553-1111646,
           1111759-1111787,1111870-1111967,1112065-1112160,
           1112399-1112620,1113002-1113158,1113472-1113627,
           1113703-1113930
          Length = 1045

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +2

Query: 38  QREILAAYGGVKLEDVRGM--RAPFLSVGGNKMFKMLYD 148
           Q E+++A GGV L+DV+G+  R   L      + + LYD
Sbjct: 395 QAELVSARGGVVLDDVQGLRERISMLEQKNEDLCRELYD 433


>01_01_0796 + 6190931-6192745
          Length = 604

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -1

Query: 153 LESYSILNILFPPTERNGALIPLTSSSFTPP 61
           LE    LN+  PP  R G   P+  SS  PP
Sbjct: 165 LEIKKELNVRLPPLRRRGGKRPIQGSSVPPP 195


>09_04_0189 +
           15438538-15438591,15438671-15438891,15438982-15439214,
           15439322-15439541,15440091-15440212,15441086-15441339,
           15441425-15441532,15441622-15441828,15441929-15442213,
           15442312-15442467
          Length = 619

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +1

Query: 421 GTFRFILSRGLVHSAAPQGRLHYVLGSHQPDAGCVD 528
           G   + L RG+VH+    G +H++ G    + G +D
Sbjct: 565 GACEYSLERGVVHACHAGGVVHFLEGYTHHEVGAID 600


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,759,170
Number of Sequences: 37544
Number of extensions: 585606
Number of successful extensions: 1574
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)