Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1095
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        27   0.18 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.9  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   3.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   6.8  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 27.1 bits (57), Expect = 0.18
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 212 TLDYKLFHDCMIPPCPTKSYPGVWEVPMVMWQDL 313
           T   ++F D +I   P KS+PGV  +    W+ +
Sbjct: 117 TKHLQVFRDHLINQIPDKSFPGVGVIDFESWRPI 150


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +2

Query: 113 VGGNKMFKMLYDSNFTYDSSLPVYEN-RP---PSWPYTLDYKLFHDCMIPPCPTKSYP 274
           +G    F  LY    T   S    +  RP   P     ++Y+L++  +I   P+  YP
Sbjct: 386 IGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYNPALIQSQPSPQYP 443


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 423 HLSVYSITRLGSLSRTTRKAS 485
           HL V  I R+GS  R +R+ S
Sbjct: 389 HLKVSGINRVGSTRRPSRRNS 409


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 327 APWVMLALIHLNPKTFI 377
           APWV    IH+ P+  +
Sbjct: 342 APWVKRVFIHILPRLLV 358


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 327 APWVMLALIHLNPKTFI 377
           APWV    IH+ P+  +
Sbjct: 342 APWVKRVFIHILPRLLV 358


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = +3

Query: 327 APWVMLALIHLNPKTFI 377
           APWV    IH+ P+  +
Sbjct: 338 APWVRRVFIHVLPRLLV 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 240,487
Number of Sequences: 438
Number of extensions: 5990
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)