Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1093
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical pr...    49   3e-06
AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical ...    39   0.003
AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical ...    39   0.003
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    33   0.12 
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ...    33   0.16 
S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.        29   1.9  
S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.        29   1.9  
AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated...    29   1.9  
AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated...    29   1.9  
Z82280-3|CAB05265.1|  387|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical ...    29   2.6  
AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical...    29   3.4  
AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical...    28   5.9  

>U58738-4|AAB00604.1|  358|Caenorhabditis elegans Hypothetical
           protein F31A9.6 protein.
          Length = 358

 Score = 48.8 bits (111), Expect = 3e-06
 Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 2/184 (1%)
 Frame = +2

Query: 2   VNDIPRSPPTHLAL--FADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKS 175
           VNDI    P  +A   FADDT +Y +S  K+     LQSA  A+  W +  ++ +N +K+
Sbjct: 92  VNDISSILPEKVACKQFADDTKLY-ASTPKTESENNLQSALDAVVDWTKGSKLTLNQSKT 150

Query: 176 TAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVR 355
             V                      IT            + LG  +   + F  H +   
Sbjct: 151 VHVTVGKRRIDFKYHLDGYPIERKAIT------------RDLGFLISEKLDFSDHWRKCI 198

Query: 356 DRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQS 535
           + A F L  ++    K S  + +  + LYKT IRP + Y +VV +   ++   T++S+Q+
Sbjct: 199 NLAKFQLANMFN---KYSTSNKKLMILLYKTFIRPRLEYGTVVSSPTKKSDEKTIESVQN 255

Query: 536 RFCR 547
            F R
Sbjct: 256 AFTR 259


>AF043700-1|AAB97571.2|  328|Caenorhabditis elegans Hypothetical
           protein K09H9.4 protein.
          Length = 328

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 23/83 (27%), Positives = 40/83 (48%)
 Frame = +2

Query: 299 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYAS 478
           LG  +   + F  H K   + A F L  ++      +K  +   + LYKT IRP + Y +
Sbjct: 150 LGFLISEKLDFSEHWKKSINLAKFQLANIFNQYSTSNKKLM---ILLYKTFIRPRLEYGT 206

Query: 479 VVFAHAARTHIDTLQSLQSRFCR 547
           VV +   ++    ++S+Q+ F R
Sbjct: 207 VVSSPTKKSDEKAIESVQNAFTR 229


>AF036692-9|AAB88330.1|  389|Caenorhabditis elegans Hypothetical
           protein C44B12.7 protein.
          Length = 389

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/74 (28%), Positives = 37/74 (50%)
 Frame = +2

Query: 299 LGVTLDASMTFRPHIKSVRDRAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYAS 478
           LG+  D+ +TF+PHIK +    +  L R   ++     +       L+KT I P++ Y S
Sbjct: 198 LGILTDSKLTFKPHIKKI---VSLALLRCKQLLKSFKSLCPEFYCNLFKTYILPLIEYGS 254

Query: 479 VVFAHAARTHIDTL 520
            V++    + + TL
Sbjct: 255 AVYSPKPSSSLSTL 268


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 33.5 bits (73), Expect = 0.12
 Identities = 25/114 (21%), Positives = 45/114 (39%)
 Frame = +2

Query: 2   VNDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTA 181
           + D+P    T L  +ADD ++    +     A+K+Q     + ++ ++  + I+  KST 
Sbjct: 548 LKDMPTQQDTMLISYADDMSIIARDKKIEKAAEKVQLHIDEIAKYLKERGMSISAEKSTV 607

Query: 182 VLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHI 343
            +F                  P I      IP     K LG+TL+     + H+
Sbjct: 608 TVFS--------CDPKEHKTKPDIYWMDDPIPVINAPKLLGITLNTMTGTKDHV 653


>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
            protein F21E9.1 protein.
          Length = 1170

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 38/160 (23%), Positives = 68/160 (42%)
 Frame = +2

Query: 11   IPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPAKSTAVLF 190
            I  +P  +++ FADD  ++++  + ++I    Q++   +  W +   + + P KS A+L 
Sbjct: 901  IDLAPTINISCFADDVKIFHT--DPTII----QNSIDIIVSWSKLNELPLAPTKS-ALLA 953

Query: 191  QXXXXXXXXXXXXXXNLTPPITLFSQSIPWARKVKYLGVTLDASMTFRPHIKSVRDRAAF 370
                            +TP  T           V+ LG+  D  + F  HI  V   +  
Sbjct: 954  LGTRNKNQSYSVDGVPITPSST-----------VRDLGLITDCKLKFEHHIVKV---SCL 999

Query: 371  ILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFA 490
             + R   ++   S  S +    LYKT + P+M Y S V+A
Sbjct: 1000 AMLRSKQILKAFSSNSPKFYAHLYKTYVAPIMNYCSEVYA 1039


>S47168-2|AAB23866.2|  919|Caenorhabditis elegans UNC-5 protein.
          Length = 919

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 250 RGCEIPPPNTGGNPC 206
           R C +PPP  GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310


>S47168-1|AAB23867.2|  947|Caenorhabditis elegans UNC-5 protein.
          Length = 947

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 250 RGCEIPPPNTGGNPC 206
           R C +PPP  GG PC
Sbjct: 324 RACTVPPPMNGGQPC 338


>AF036698-5|AAB88356.2|  567|Caenorhabditis elegans Uncoordinated
           protein 5, isoform b protein.
          Length = 567

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 250 RGCEIPPPNTGGNPC 206
           R C +PPP  GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310


>AF036698-4|AAB88355.1|  919|Caenorhabditis elegans Uncoordinated
           protein 5, isoform a protein.
          Length = 919

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 250 RGCEIPPPNTGGNPC 206
           R C +PPP  GG PC
Sbjct: 296 RACTVPPPMNGGQPC 310


>Z82280-3|CAB05265.1|  387|Caenorhabditis elegans Hypothetical
           protein R05A10.3 protein.
          Length = 387

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
 Frame = +1

Query: 85  VPNREEASERSPSPRTVVPKMAHRHQPSEKYCGALSEGKLHTDFLPY*EEESHTPDYSL* 264
           + N E      P+    +PK   + +P +   G+ S+    TD   Y      + DY   
Sbjct: 127 INNMETGVPEGPTKEPYMPKPITKPKPGQNNSGSFSDSTDFTDSSDYTRYTDGSTDYPGG 186

Query: 265 SIHTLG--QEGQVPGRYPGCIDDIPPAY 342
           S    G   +  + G     I+ IPP Y
Sbjct: 187 STDVPGGSTDSPIDGSTDLPIESIPPVY 214


>AF016688-9|AAN65322.1|  816|Caenorhabditis elegans Hypothetical
           protein F18A12.8b protein.
          Length = 816

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 5   NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 169
           ND+P+    +L L   D+  YY    KS++  + +     L + F K   DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638


>AF016688-8|AAB66079.2|  848|Caenorhabditis elegans Hypothetical
           protein F18A12.8a protein.
          Length = 848

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 5   NDIPRSPPTHLALFADDTTVYYSSRNKSLIAKKLQSAALALGQWFRKWRIDINPA 169
           ND+P+    +L L   D+  YY    KS++  + +     L + F K   DI+PA
Sbjct: 585 NDLPKLDKQYLGLSISDSDTYYYIMKKSVVWMQSREFQ-KLTKPFDKHEFDISPA 638


>AF039044-12|AAG24130.2|  405|Caenorhabditis elegans Hypothetical
           protein F48G7.11 protein.
          Length = 405

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +2

Query: 359 RAAFILGRLYPMICKRSKMSLRNKVTLYKTCIRPVMTYASVVFAHAARTHIDTLQSLQSR 538
           RA     +   M+C+R   SL++++   K C R  M Y + +  +  +T  D + S  SR
Sbjct: 37  RAVMRSAKSQDMVCERESCSLKDRIQCCKIC-RLKMCYDAGMDPNKFQTGRDLISS-SSR 94

Query: 539 FCRL-AVGAPWFVRN 580
              L +VG+P  + N
Sbjct: 95  SSNLSSVGSPQSLAN 109


>AC024791-24|AAF60656.1|  627|Caenorhabditis elegans Hypothetical
           protein Y47G6A.4 protein.
          Length = 627

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 24/86 (27%), Positives = 37/86 (43%)
 Frame = +1

Query: 88  PNREEASERSPSPRTVVPKMAHRHQPSEKYCGALSEGKLHTDFLPY*EEESHTPDYSL*S 267
           PN ++ S   P+PR + P+ A R  PS+    A SE K  + F      E  + DY    
Sbjct: 540 PNVQQESVVVPAPRRLSPQRAPR--PSQNSPNAYSERKSFSAF----PSEDPSEDYETPI 593

Query: 268 IHTLGQEGQVPGRYPGCIDDIPPAYK 345
           I  +    +   +Y   +D + P  K
Sbjct: 594 ISHIMNRNEA-DQYFNILDSVKPGQK 618


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,739,114
Number of Sequences: 27780
Number of extensions: 334711
Number of successful extensions: 852
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)