Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1093
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.3  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   9.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.3  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +1

Query: 121  SPRTVVPKMAHRHQPSEKYCGALSEG 198
            S RT VP++A      E Y G  + G
Sbjct: 1336 SRRTPVPRLAQDSSEDESYRGPSASG 1361


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 187  LSEGKLHTDFLPY*EEESHTPDYSL*SIHTLGQEGQVPGRYPG 315
            L  G +    + Y E  S  P Y+  S+   G+EG    R  G
Sbjct: 1034 LRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTG 1076


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.0
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +1

Query: 187  LSEGKLHTDFLPY*EEESHTPDYSL*SIHTLGQEGQVPGRYPG 315
            L  G +    + Y E  S  P Y+  S+   G+EG    R  G
Sbjct: 1030 LRHGDIQGFNVGYRETSSSNPSYNFSSVSGDGEEGGAELRLTG 1072


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 11/40 (27%), Positives = 14/40 (35%)
 Frame = +2

Query: 161 NPAKSTAVLFQXXXXXXXXXXXXXXNLTPPITLFSQSIPW 280
           NPA  TA  +                L   ++LF Q  PW
Sbjct: 68  NPAMQTATNYYLFSLAISDLILLVLGLPNELSLFWQQYPW 107


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 298 PGRYPGCIDDIPPAY 342
           PG YP     +PP+Y
Sbjct: 302 PGVYPSTAGFLPPSY 316


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,476
Number of Sequences: 438
Number of extensions: 4219
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)