Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1092
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 29 0.28
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 29 0.28
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr... 28 0.49
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 28 0.64
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 27 1.5
SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces po... 26 2.0
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 2.0
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 2.0
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 26 2.6
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 26 2.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 25 3.4
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 25 6.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 25 6.0
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 25 6.0
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 25 6.0
SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 24 7.9
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 24 7.9
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 29.1 bits (62), Expect = 0.28
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +2
Query: 5 VLESWSRRLANPTWGLRTVEAVYPVFYDWV 94
++ W LA TWG T+ YP Y+ V
Sbjct: 1872 LIAGWCEHLAQNTWGDSTISLEYPGIYELV 1901
>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 987
Score = 29.1 bits (62), Expect = 0.28
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 363 IAFQDSSPPSIDATTPGSDKSGPIFATRTRRCT 265
I F + PP +DAT S + G F T+ CT
Sbjct: 639 ILFHELPPPGLDATAYSSWEKGDNFVTKKNVCT 671
>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 172
Score = 28.3 bits (60), Expect = 0.49
Identities = 25/83 (30%), Positives = 36/83 (43%)
Frame = -1
Query: 347 RRRQASTPRRQAATSLVLSLRQGHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSAQLLSGA 168
RRR A+ P R+AA + S A PP+ PP P RV ++ Q S
Sbjct: 3 RRRSAAPPPRRAAPARSASTA---AALPPRT----MAPPPAPSRVQQAPPPTAVQGGSSP 55
Query: 167 GTFQSIRAQSAPAPDGR*GVLGH 99
G F ++ + +A G +GH
Sbjct: 56 GFFGNLVSTAAGVGIG--SAIGH 76
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 27.9 bits (59), Expect = 0.64
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = -3
Query: 396 LCEMVHSQKSSIAFQDSSPPSIDATTPGSDKSGPI-FATRTRRCTSQ 259
L E+++ +K IAF + PPS P G + R+R C S+
Sbjct: 370 LVEVINLEKLQIAFTSNEPPSGSGVLPFLTNGGCYSYICRSRSCPSK 416
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.6 bits (56), Expect = 1.5
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 265 GAAPCPCRKDRTRLVAAWRRGVD 333
GAA RKD RL +W+RG D
Sbjct: 176 GAAQPTIRKDGLRLWGSWKRGKD 198
>SPAC1071.04c |||signal peptidase subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 167
Score = 26.2 bits (55), Expect = 2.0
Identities = 17/70 (24%), Positives = 37/70 (52%)
Frame = -2
Query: 268 HLPSGADSERMLRRVQVVSTMVAPRRRLSSYPVQVLSKASVPSQHLHQTEGEASSATIHP 89
H+ AD+ L+ +++T + ++ VQ+ + SVP H+ + +G+ SSAT
Sbjct: 101 HIKISADTFLPLKNKPLITTKFTVLKNRNA--VQL--EWSVPVAHIFEEDGQISSATFEA 156
Query: 88 VIKDRVNRLD 59
I +++++
Sbjct: 157 EISKYLSQIE 166
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.2 bits (55), Expect = 2.0
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 339 PSIDATTPGSDKSGPIFATRTRRCTSQAGQTAS 241
P+ D TT S K+GP+F + +++ G TAS
Sbjct: 377 PATDTTTSTS-KTGPLFGNKPADPSAKPGATAS 408
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 2.0
Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 191 SAQLLSGAGTFQSIRAQSAPAPDGR*-GVLGHDSPSHKRPGKPPRRSVDPTWGWPT 27
++QL +G + S ++PA + + PS+ +P +PP+ P+ G P+
Sbjct: 66 ASQLRAGGSSTGSTPRTASPAVGNQDYSKPSYSQPSYSQPSQPPKEPALPSRGTPS 121
Score = 24.6 bits (51), Expect = 6.0
Identities = 21/78 (26%), Positives = 29/78 (37%)
Frame = -1
Query: 359 PSKTRRRQASTPRRQAATSLVLSLRQGHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSAQL 180
P+ R S P R + VL+ Q PP R + PP P +G S + Q
Sbjct: 112 PALPSRGTPSLPSRPGSRPSVLNQEQV--PPPPVRPNVMSQMPPPPSYSSSGSYSQTYQS 169
Query: 179 LSGAGTFQSIRAQSAPAP 126
+ + SA AP
Sbjct: 170 NANYTASSPLPTASANAP 187
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.8 bits (54), Expect = 2.6
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -2
Query: 154 ASVPSQHLHQTEGEASSATIHPVIKDRVNRLDGP*TPRGVGQPPRP 17
+S+ S LH + +++I P I+ +N+++ P V P P
Sbjct: 136 SSLSSSTLHSVNEKQPNSSISPTIESSMNKVNLPGAEEQVSATPLP 181
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +2
Query: 230 AEHTLAVCPAWEVQRRVLVAKIGPDLSLPGVVASMLGGDESWKAMLDFCECTISHK 397
A+ AVC ++VQ + + P + ++ GD S+K++ F +I K
Sbjct: 90 ADQNRAVCSQYQVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFVSDSIPSK 145
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 25.4 bits (53), Expect = 3.4
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -2
Query: 166 VLSKASVPSQHLHQTEGEASSATIHPVIKDRVNRLDGP*TPRGVGQP 26
V SK + + Q EASSA P K RL G +GV +P
Sbjct: 1725 VTSKPTASKADVGQNATEASSAKREPSGKSLSARLQGTGKQKGVQRP 1771
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -3
Query: 387 MVHSQKSSIAFQDSSPPSIDATTPGSDKSGPIFATRTRRC 268
+V Q ++A+ + S+ A + K GP+F R C
Sbjct: 645 VVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSC 684
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -3
Query: 387 MVHSQKSSIAFQDSSPPSIDATTPGSDKSGPIFATRTRRC 268
+V Q ++A+ + S+ A + K GP+F R C
Sbjct: 645 VVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRSC 684
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 24.6 bits (51), Expect = 6.0
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -1
Query: 89 SHKRPGKPPRRSVDPTWGWPTASTTI 12
S +R G P R +DP W P + + +
Sbjct: 194 SEERGGTKPERLLDPLWPTPDSQSML 219
>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 551
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -1
Query: 197 SSSAQLLSGAGTFQSIRAQSAPAPDGR*GV 108
+SS +L FQS+R + +P G+ GV
Sbjct: 59 TSSLSMLGAVALFQSLRRLNNSSPKGKSGV 88
>SPBP23A10.13 |orc4|orp4|origin recognition complex subunit
Orc4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 972
Score = 24.2 bits (50), Expect = 7.9
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 384 VHSQKSSIAFQDSSPPSIDATTPGSDK 304
VHS ++ + SSP S+ P SD+
Sbjct: 453 VHSSSATPQSESSSPNSVSPLLPSSDR 479
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 24.2 bits (50), Expect = 7.9
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +2
Query: 143 GHGCFGKYLHRIGAEPTTRCHHCGH--DLDTAEHTLAVCPAWEVQ 271
GH F K+LH++G + H + + E+T A PA V+
Sbjct: 10 GHNGFSKFLHKLGFGKSKGKSHKSNTSSIHERENTAAKGPASNVR 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,892,203
Number of Sequences: 5004
Number of extensions: 38478
Number of successful extensions: 143
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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