Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1092
(407 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen pro... 32 0.18
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 0.24
AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical ... 31 0.24
Z92838-9|CAD30449.1| 549|Caenorhabditis elegans Hypothetical pr... 30 0.74
Z92838-8|CAB07407.1| 401|Caenorhabditis elegans Hypothetical pr... 30 0.74
Z92838-7|CAB07405.1| 593|Caenorhabditis elegans Hypothetical pr... 30 0.74
Z83225-1|CAB05721.1| 324|Caenorhabditis elegans Hypothetical pr... 30 0.74
Z81045-6|CAB02820.1| 324|Caenorhabditis elegans Hypothetical pr... 30 0.74
AF286206-1|AAK28741.1| 549|Caenorhabditis elegans C kinase adap... 30 0.74
AF286205-1|AAK28740.1| 593|Caenorhabditis elegans C kinase adap... 30 0.74
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical pr... 29 1.3
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 29 1.7
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 29 1.7
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 29 1.7
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 29 1.7
U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical pr... 29 1.7
Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical pr... 28 3.0
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 3.0
AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical ... 28 3.0
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 3.0
AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical ... 27 3.9
AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen pro... 27 3.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 27 3.9
Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z72518-1|CAA96699.2| 395|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 27 5.2
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr... 27 5.2
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr... 27 5.2
AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical ... 27 5.2
Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z72506-3|CAA96617.1| 310|Caenorhabditis elegans Hypothetical pr... 27 6.9
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 27 6.9
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 27 6.9
AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical ... 27 6.9
AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical ... 27 6.9
AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen prot... 27 6.9
Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 26 9.1
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr... 26 9.1
U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protei... 26 9.1
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 26 9.1
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 26 9.1
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 26 9.1
AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein... 26 9.1
>AF022985-10|AAB69961.1| 325|Caenorhabditis elegans Collagen
protein 142 protein.
Length = 325
Score = 31.9 bits (69), Expect = 0.18
Identities = 31/97 (31%), Positives = 38/97 (39%), Gaps = 4/97 (4%)
Frame = -1
Query: 281 GHGAAP--PKRGRQRAYAPPCP-GRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*G 111
GH +P P RG QR+ P P GR G + +G S Q P P G+ G
Sbjct: 185 GHPGSPGNPGRGGQRSRGLPGPSGRPGPPGPAGGPGQPGHSGGAGSPGPQGPPGPSGQPG 244
Query: 110 VLGHDSPSHKRPGKPPRRSVDPTW-GWPTASTTIRAR 3
G+D PG P D + P S I AR
Sbjct: 245 HSGNDGVP-GAPGNPGSPGGDAAYCPCPARSAAIAAR 280
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 31.5 bits (68), Expect = 0.24
Identities = 34/118 (28%), Positives = 48/118 (40%), Gaps = 9/118 (7%)
Frame = -1
Query: 371 SRA*PSKTRRRQASTPRRQAATSLVLSLRQGHGAAP------PKRGRQRAYAPPCPGRVH 210
S++ P+ RRR S R A + R+ + PKR + R+ +PP P R
Sbjct: 382 SKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPSASKSPPAPKRAKSRSKSPPAPRR-- 439
Query: 209 NGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLGHDSPSHKR---PGKPPRRSVDP 45
S +Q S A + ++S AP R G S S +R P PRR P
Sbjct: 440 ---RRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQSP 494
Score = 29.5 bits (63), Expect = 0.98
Identities = 34/117 (29%), Positives = 46/117 (39%), Gaps = 12/117 (10%)
Frame = -1
Query: 356 SKTRRRQASTPRRQAATSLVLSLRQGHGAAPPKRGRQRAYAPPCPGRVHNGGTSSS---- 189
S RRR S + S Q AP KR + R+ +PP P R ++S
Sbjct: 301 SPRRRRSPSASKSPPPARRRRSPSQSKSPAP-KRAKSRSKSPPAPARRRRSPSASKSPPP 359
Query: 188 ----AQLLSGAGTFQSIRAQSA----PAPDGR*GVLGHDSPSHKRPGKPPRRSVDPT 42
A+ S + + R+ SA PAP R SP+ KR P RR P+
Sbjct: 360 APKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRRSPS 416
>AC006627-3|AAK85461.1| 504|Caenorhabditis elegans Hypothetical
protein E01A2.4 protein.
Length = 504
Score = 31.5 bits (68), Expect = 0.24
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Frame = -1
Query: 377 RRSRA*PSKTRRRQASTPRRQAATSLVLSLRQ------GHGAAPPKRGRQRAYAPPCPGR 216
+RSR+ P +TRR + RR+ + S V R +PP R +QR+ +PP R
Sbjct: 102 KRSRSPPRRTRRSPSPPRRRRISRSPVRRSRSPPRRQVSRSRSPPPRRQQRSRSPPPAKR 161
Query: 215 VHNGGTSSS 189
+ S S
Sbjct: 162 RRDQSRSKS 170
>Z92838-9|CAD30449.1| 549|Caenorhabditis elegans Hypothetical
protein T03D8.1c protein.
Length = 549
Score = 29.9 bits (64), Expect = 0.74
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 263 PKRGRQRAYAPP-CPGR--VHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLGHDS 93
PK G A+APP P R V NG S Q L A + +++PA G+ + S
Sbjct: 470 PKSGPPPAHAPPPLPVRQAVSNGSPSIYQQQLQQANS-----TRNSPA-----GINWNSS 519
Query: 92 PSHKRPGKPPRRSVDP 45
P+ + +PP + VDP
Sbjct: 520 PNPMKISQPPAKPVDP 535
>Z92838-8|CAB07407.1| 401|Caenorhabditis elegans Hypothetical
protein T03D8.1b protein.
Length = 401
Score = 29.9 bits (64), Expect = 0.74
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 263 PKRGRQRAYAPP-CPGR--VHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLGHDS 93
PK G A+APP P R V NG S Q L A + +++PA G+ + S
Sbjct: 322 PKSGPPPAHAPPPLPVRQAVSNGSPSIYQQQLQQANS-----TRNSPA-----GINWNSS 371
Query: 92 PSHKRPGKPPRRSVDP 45
P+ + +PP + VDP
Sbjct: 372 PNPMKISQPPAKPVDP 387
>Z92838-7|CAB07405.1| 593|Caenorhabditis elegans Hypothetical
protein T03D8.1a protein.
Length = 593
Score = 29.9 bits (64), Expect = 0.74
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 263 PKRGRQRAYAPP-CPGR--VHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLGHDS 93
PK G A+APP P R V NG S Q L A + +++PA G+ + S
Sbjct: 514 PKSGPPPAHAPPPLPVRQAVSNGSPSIYQQQLQQANS-----TRNSPA-----GINWNSS 563
Query: 92 PSHKRPGKPPRRSVDP 45
P+ + +PP + VDP
Sbjct: 564 PNPMKISQPPAKPVDP 579
>Z83225-1|CAB05721.1| 324|Caenorhabditis elegans Hypothetical
protein F42H11.1 protein.
Length = 324
Score = 29.9 bits (64), Expect = 0.74
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = -1
Query: 287 RQGHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GV 108
R+G A P G A + P PG H+ + Q L+G G + APA G
Sbjct: 56 REGSEAGTPSPGGSAAPSAPAPGGTHD----PNYQTLAGIGNDCYEKKDGAPAAGGG--- 108
Query: 107 LGHDSPSHKRPG 72
G P++ +PG
Sbjct: 109 -GPAPPANAKPG 119
>Z81045-6|CAB02820.1| 324|Caenorhabditis elegans Hypothetical
protein F42H11.1 protein.
Length = 324
Score = 29.9 bits (64), Expect = 0.74
Identities = 22/72 (30%), Positives = 31/72 (43%)
Frame = -1
Query: 287 RQGHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GV 108
R+G A P G A + P PG H+ + Q L+G G + APA G
Sbjct: 56 REGSEAGTPSPGGSAAPSAPAPGGTHD----PNYQTLAGIGNDCYEKKDGAPAAGGG--- 108
Query: 107 LGHDSPSHKRPG 72
G P++ +PG
Sbjct: 109 -GPAPPANAKPG 119
>AF286206-1|AAK28741.1| 549|Caenorhabditis elegans C kinase adapter
1s protein.
Length = 549
Score = 29.9 bits (64), Expect = 0.74
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 263 PKRGRQRAYAPP-CPGR--VHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLGHDS 93
PK G A+APP P R V NG S Q L A + +++PA G+ + S
Sbjct: 470 PKSGPPPAHAPPPLPVRQAVSNGSPSIYQQQLQQANS-----TRNSPA-----GINWNSS 519
Query: 92 PSHKRPGKPPRRSVDP 45
P+ + +PP + VDP
Sbjct: 520 PNPMKISQPPAKPVDP 535
>AF286205-1|AAK28740.1| 593|Caenorhabditis elegans C kinase adapter
1 protein.
Length = 593
Score = 29.9 bits (64), Expect = 0.74
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Frame = -1
Query: 263 PKRGRQRAYAPP-CPGR--VHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLGHDS 93
PK G A+APP P R V NG S Q L A + +++PA G+ + S
Sbjct: 514 PKSGPPPAHAPPPLPVRQAVSNGSPSIYQQQLQQANS-----TRNSPA-----GINWNSS 563
Query: 92 PSHKRPGKPPRRSVDP 45
P+ + +PP + VDP
Sbjct: 564 PNPMKISQPPAKPVDP 579
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 29.1 bits (62), Expect = 1.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = -3
Query: 312 SDKSGPIFATRTRRCTSQAGQTASVCSAVS 223
S K GP TRTR C GQ A+ C S
Sbjct: 664 SSKCGPGQRTRTRGCLGPNGQEATTCQGPS 693
>Z12017-1|CAA78047.1| 458|Caenorhabditis elegans Hypothetical
protein R08D7.1 protein.
Length = 458
Score = 29.1 bits (62), Expect = 1.3
Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Frame = -1
Query: 269 APPKRGRQRA-YAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLGHDS 93
+PP+R R + +PP P R + S+ S T + P R +S
Sbjct: 147 SPPRRRRHDSDNSPPRPSRKIREESPSARNRRSPPRTRRDRHDSDNSPPRNRSRRDSDNS 206
Query: 92 PSHKRPGKPPRRSVDPTWGWPTASTTI 12
P +RP P RR D P S I
Sbjct: 207 PPRRRPSSPARRRKDDDLSPPRKSRKI 233
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 95 NRGRGRLTFRLVQVLTGHGCFGKYLHRIGAEP--TTRCHHCGHDLDTAEHTLAVCPAWEV 268
+ G+GR + + + G G G +H +G + + RC CG A H CP +
Sbjct: 76 SNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG---KFATHKAKSCPNVKT 132
Query: 269 QRRV 280
+V
Sbjct: 133 DAKV 136
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 95 NRGRGRLTFRLVQVLTGHGCFGKYLHRIGAEP--TTRCHHCGHDLDTAEHTLAVCPAWEV 268
+ G+GR + + + G G G +H +G + + RC CG A H CP +
Sbjct: 107 SNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG---KFATHKAKSCPNVKT 163
Query: 269 QRRV 280
+V
Sbjct: 164 DAKV 167
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 95 NRGRGRLTFRLVQVLTGHGCFGKYLHRIGAEP--TTRCHHCGHDLDTAEHTLAVCPAWEV 268
+ G+GR + + + G G G +H +G + + RC CG A H CP +
Sbjct: 107 SNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG---KFATHKAKSCPNVKT 163
Query: 269 QRRV 280
+V
Sbjct: 164 DAKV 167
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.7
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +2
Query: 95 NRGRGRLTFRLVQVLTGHGCFGKYLHRIGAEP--TTRCHHCGHDLDTAEHTLAVCPAWEV 268
+ G+GR + + + G G G +H +G + + RC CG A H CP +
Sbjct: 107 SNGKGREAYAVSGEVEGQGLKGSRIHPLGRKKAVSLRCFRCG---KFATHKAKSCPNVKT 163
Query: 269 QRRV 280
+V
Sbjct: 164 DAKV 167
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 28.7 bits (61), Expect = 1.7
Identities = 19/51 (37%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = -1
Query: 167 GTFQSIRAQSAPAPDGR*GVLG-HDSPSHK----RPGKPPRRSVDPTWGWP 30
GT AP P G G G H +P PG+PPR DPT P
Sbjct: 97 GTCDGCCIPGAPGPSGTPGRHGRHGAPGAPGRPGNPGEPPRGPCDPTLASP 147
>U41031-3|AAA82620.1| 164|Caenorhabditis elegans Hypothetical
protein C16B8.3 protein.
Length = 164
Score = 28.7 bits (61), Expect = 1.7
Identities = 23/79 (29%), Positives = 34/79 (43%)
Frame = -1
Query: 278 HGAAPPKRGRQRAYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLGH 99
+GA PP G YAPP P R + + + GAG S Q AP P G +
Sbjct: 37 YGAPPPPVGAGVGYAPP-PPRPYGATYAPPPPMGIGAGVNPSGYVQQAP-PLPTQGYSAY 94
Query: 98 DSPSHKRPGKPPRRSVDPT 42
+ P +P + ++ P+
Sbjct: 95 NQQPPPLPQQPYQTNMYPS 113
>Z81028-1|CAB02690.1| 1099|Caenorhabditis elegans Hypothetical
protein B0365.1 protein.
Length = 1099
Score = 27.9 bits (59), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 203 GTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLG 102
G S AQ A T S+ + AP PDG+ ++G
Sbjct: 320 GDPSEAQTYEYAKTILSVMTEGAPRPDGKVLIIG 353
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 27.9 bits (59), Expect = 3.0
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = -1
Query: 281 GHGAAPPKRGRQRAYAPPCPGRVHN--GGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GV 108
G G PP +G+Q PP PG+ + GG Q +AQ P P
Sbjct: 677 GQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQR-------PPYQAQPYPGPPPPQQQ 729
Query: 107 LGHDSPSHKRPGKP 66
G+ P +PG P
Sbjct: 730 RGYGYPPPPQPGHP 743
>AL021448-3|CAA16275.1| 291|Caenorhabditis elegans Hypothetical
protein Y2H9A.3 protein.
Length = 291
Score = 27.9 bits (59), Expect = 3.0
Identities = 21/83 (25%), Positives = 30/83 (36%)
Frame = -1
Query: 287 RQGHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GV 108
+ G AP + G + P G G + AG A AP PDG+ G
Sbjct: 185 QDGQPGAPGQDGHRSTGTPGAAGAPGPAGPAGQDGQPGSAGGPGEAGAPGAPGPDGQPGQ 244
Query: 107 LGHDSPSHKRPGKPPRRSVDPTW 39
G D + PG+ + D +
Sbjct: 245 PGQDGEA-GAPGQDGQPGSDAAY 266
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 27.9 bits (59), Expect = 3.0
Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Frame = -1
Query: 281 GHGAAPPKRGRQRAYAPPCPGRVHN--GGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GV 108
G G PP +G+Q PP PG+ + GG Q +AQ P P
Sbjct: 677 GQGPPPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQR-------PPYQAQPYPGPPPPQQQ 729
Query: 107 LGHDSPSHKRPGKP 66
G+ P +PG P
Sbjct: 730 RGYGYPPPPQPGHP 743
>AF047653-2|AAC04459.1| 388|Caenorhabditis elegans Hypothetical
protein W02F12.3 protein.
Length = 388
Score = 27.5 bits (58), Expect = 3.9
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 342 PPSIDATTPGSDKSGPIFATRTRRCTSQAGQTASVCSAVSRS-CP 211
P S A TP ++ P+ ATR R SQ + + + R+ CP
Sbjct: 57 PGSSSAPTPAGNQVAPMPATRPREAESQNAAQPGLSTQIWRAICP 101
>AF022985-12|AAB69959.1| 319|Caenorhabditis elegans Collagen
protein 143 protein.
Length = 319
Score = 27.5 bits (58), Expect = 3.9
Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Frame = -1
Query: 281 GHGAAP--PKRGRQRAYAPP-CPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*G 111
GH +P P RG QR+ P GR G + + +G + Q P P G+ G
Sbjct: 185 GHPGSPGNPGRGGQRSRGTPGASGRPGPQGPAGAPGQPGRSGGAGTPGPQGPPGPSGQPG 244
Query: 110 VLGHDSPSHKRPGKP 66
G+D PG P
Sbjct: 245 HSGNDGVP-GTPGNP 258
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 27.5 bits (58), Expect = 3.9
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +3
Query: 15 RGRGGWPTPRGVYGPSR 65
RGRGG P PRG+ P R
Sbjct: 1463 RGRGGPPPPRGMNSPMR 1479
>Z79639-1|CAB01916.1| 2948|Caenorhabditis elegans Hypothetical protein
F54E4.1 protein.
Length = 2948
Score = 27.1 bits (57), Expect = 5.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -1
Query: 98 DSPSHKRPGKPPRRSVDPTWGWPTAS 21
D+ + P PP+ S+D W PT S
Sbjct: 1932 DNQNQAAPPPPPQMSIDVDWSKPTTS 1957
>Z72518-1|CAA96699.2| 395|Caenorhabditis elegans Hypothetical
protein ZC374.1 protein.
Length = 395
Score = 27.1 bits (57), Expect = 5.2
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = +2
Query: 125 LVQVLTGHGCFGKYLHRIGAEPTTRCHHCGHDLDTA 232
L ++ C +L+R G EP ++C +DTA
Sbjct: 283 LQAIIIASTCINPFLYRFGTEPKRNSYYCS-TMDTA 317
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 27.1 bits (57), Expect = 5.2
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Frame = -1
Query: 287 RQGHGAAPPKRGRQ--RAYAP-PCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR 117
++G +P RG+ + +AP CP R G AG SI P PDGR
Sbjct: 116 QRGTSGSPGPRGQDNHQVHAPIQCP-RQQPGCVKCPR---GPAGPTGSIGQAGRPGPDGR 171
Query: 116 *GVLGHDSPSHKRPGKP 66
G G ++ RPG+P
Sbjct: 172 PGQPGRKG-NNGRPGQP 187
>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
protein F56C9.10b protein.
Length = 1031
Score = 27.1 bits (57), Expect = 5.2
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -1
Query: 401 PPCARWCTRRSRA*PSKTRRRQASTPRRQAATSLVLSLRQGHGAAPPKRGRQRAYAPPCP 222
P R T + PS+T Q S QA LV AAPP++ QR+ PP P
Sbjct: 115 PVVNRTTTSPPTSPPSQTAVEQDSL---QAEEMLVDMSLDDAPAAPPRKPHQRSAPPPIP 171
>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
protein F56C9.10a protein.
Length = 1028
Score = 27.1 bits (57), Expect = 5.2
Identities = 21/60 (35%), Positives = 26/60 (43%)
Frame = -1
Query: 401 PPCARWCTRRSRA*PSKTRRRQASTPRRQAATSLVLSLRQGHGAAPPKRGRQRAYAPPCP 222
P R T + PS+T Q S QA LV AAPP++ QR+ PP P
Sbjct: 112 PVVNRTTTSPPTSPPSQTAVEQDSL---QAEEMLVDMSLDDAPAAPPRKPHQRSAPPPIP 168
>AF101315-3|AAC69227.1| 880|Caenorhabditis elegans Hypothetical
protein T22H9.2a protein.
Length = 880
Score = 27.1 bits (57), Expect = 5.2
Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 8/50 (16%)
Frame = -2
Query: 178 YPVQVLSKASVPSQHLHQ----TEGEASSATI----HPVIKDRVNRLDGP 53
+P Q+L ++ + +H T G S++ + HP+I D ++R+DGP
Sbjct: 643 FPDQILPPRNILLESVHSIVPTTSGGISASQVAPGRHPLIGDGLHRIDGP 692
>Z92773-4|CAB07130.2| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 290 LRQGHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSA 186
LR+G + PP R R R P P R +G SSA
Sbjct: 289 LRRGTTSGPPSRLRGRMSHPMGPPRRSSGAPPSSA 323
>Z81114-8|CAB97236.1| 584|Caenorhabditis elegans Hypothetical
protein W08E3.2 protein.
Length = 584
Score = 26.6 bits (56), Expect = 6.9
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -1
Query: 290 LRQGHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSA 186
LR+G + PP R R R P P R +G SSA
Sbjct: 289 LRRGTTSGPPSRLRGRMSHPMGPPRRSSGAPPSSA 323
>Z72506-3|CAA96617.1| 310|Caenorhabditis elegans Hypothetical
protein F07A5.2 protein.
Length = 310
Score = 26.6 bits (56), Expect = 6.9
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = -1
Query: 302 LVLSLRQGHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPD 123
+ LSL H P RGR + PP P + H G +S + + S+ ++S D
Sbjct: 202 VALSLMNAH---PDLRGRFKPVPPPTPMKKHTPGINSPRKRPLRRESISSVNSKSVRFTD 258
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 26.6 bits (56), Expect = 6.9
Identities = 23/57 (40%), Positives = 26/57 (45%), Gaps = 3/57 (5%)
Frame = -1
Query: 281 GHGAAPPKRGR-QRAYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRA--QSAPAPDG 120
G A P G AP PG + G TS+S SG G F S A +APAP G
Sbjct: 160 GSSTAAPSSGLFGSTAAPAAPGGLF-GSTSTSTAAPSG-GLFGSSAAPTSTAPAPSG 214
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 26.6 bits (56), Expect = 6.9
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = -1
Query: 281 GHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLG 102
G GAA P + AP G+ N GT+ S + A T P P G G G
Sbjct: 115 GIGAAGPAGAPGKDGAPGEDGKAGNPGTAGSDAEAAAAPTASDFCFDCPPGPAGPPGGPG 174
Query: 101 HDSP 90
P
Sbjct: 175 PPGP 178
>AF040659-3|AAK39392.1| 919|Caenorhabditis elegans Hypothetical
protein ZK484.4a protein.
Length = 919
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 359 PSKTRRRQASTPRRQAATSLVLSLR 285
P+K RR AS+P++Q A+S S +
Sbjct: 873 PAKRRRSNASSPKKQTASSSASSTK 897
>AF040659-2|AAK39393.1| 873|Caenorhabditis elegans Hypothetical
protein ZK484.4b protein.
Length = 873
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 359 PSKTRRRQASTPRRQAATSLVLSLR 285
P+K RR AS+P++Q A+S S +
Sbjct: 827 PAKRRRSNASSPKKQTASSSASSTK 851
>AC024811-5|AAF60775.1| 285|Caenorhabditis elegans Collagen protein
48 protein.
Length = 285
Score = 26.6 bits (56), Expect = 6.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = -1
Query: 143 QSAPAPDGR*GVLGHDSPSHKRPGKP 66
Q P PDG G G D + PG+P
Sbjct: 94 QGPPGPDGEPGTPGKDGEPGQGPGEP 119
>Z83234-5|CAB70171.2| 640|Caenorhabditis elegans Hypothetical
protein K09E4.2 protein.
Length = 640
Score = 26.2 bits (55), Expect = 9.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 112 PHLPSGAGADWARMLWKVP 168
PH+ S + W + LWKVP
Sbjct: 361 PHVASVSTIPWRQFLWKVP 379
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 26.2 bits (55), Expect = 9.1
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Frame = -1
Query: 242 AYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAP-APD-----GR*GVLGHDSPSHK 81
A AP PG + G A SGAG + AP AP G G G D+ S
Sbjct: 158 AGAPGAPGPQGDAGAPGQAGQGSGAGAPGPAGPKGAPGAPGNPGQAGAPGQPGSDAQSES 217
Query: 80 RPGKP 66
PG P
Sbjct: 218 SPGAP 222
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 26.2 bits (55), Expect = 9.1
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Frame = -1
Query: 242 AYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAP-APD-----GR*GVLGHDSPSHK 81
A AP PG + G A SGAG + AP AP G G G D+ S
Sbjct: 158 AGAPGAPGPQGDAGAPGQAGQGSGAGAPGPAGPKGAPGAPGNPGQAGAPGQPGSDAQSES 217
Query: 80 RPGKP 66
PG P
Sbjct: 218 SPGAP 222
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 26.2 bits (55), Expect = 9.1
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Frame = -1
Query: 242 AYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAP-APD-----GR*GVLGHDSPSHK 81
A AP PG + G A SGAG + AP AP G G G D+ S
Sbjct: 158 AGAPGAPGPQGDAGAPGQAGQGSGAGAPGPAGPKGAPGAPGNPGQAGAPGQPGSDAQSES 217
Query: 80 RPGKP 66
PG P
Sbjct: 218 SPGAP 222
>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
protein F26C11.3 protein.
Length = 1317
Score = 26.2 bits (55), Expect = 9.1
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 95 SPSHKRPGKPPRRSVDPTWGWPTASTT 15
SP+ +P P S+ T+ WPT TT
Sbjct: 844 SPTSSKP-TPTSTSMTTTYNWPTGGTT 869
>U55366-4|AAA97982.1| 310|Caenorhabditis elegans Collagen protein
139 protein.
Length = 310
Score = 26.2 bits (55), Expect = 9.1
Identities = 15/57 (26%), Positives = 20/57 (35%)
Frame = -1
Query: 236 APPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLGHDSPSHKRPGKP 66
AP PG+ G + G + P DG+ G G S PG+P
Sbjct: 171 APGAPGKPGAPGVGGGSGAPGAPGPKGAPGGPGQPGRDGQPGQAGQPGSSSSEPGQP 227
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 200 TSSSAQLLSGAGTFQSIRAQSAPAPDG 120
T+SS+ SGA T + A S+PAP G
Sbjct: 54 TTSSSASASGASTPANQAASSSPAPSG 80
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 200 TSSSAQLLSGAGTFQSIRAQSAPAPDG 120
T+SS+ SGA T + A S+PAP G
Sbjct: 54 TTSSSASASGASTPANQAASSSPAPSG 80
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 26.2 bits (55), Expect = 9.1
Identities = 20/64 (31%), Positives = 24/64 (37%)
Frame = -1
Query: 281 GHGAAPPKRGRQRAYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR*GVLG 102
G GAA P + AP G+ N GT+ S + A T P P G G G
Sbjct: 128 GIGAAGPAGAPGKDGAPGEDGKAGNPGTAGSDAEAAAAPTASDFCFDCPPGPAGPAGGPG 187
Query: 101 HDSP 90
P
Sbjct: 188 PAGP 191
>AF025458-5|AAB70974.1| 298|Caenorhabditis elegans Squat protein 2
protein.
Length = 298
Score = 26.2 bits (55), Expect = 9.1
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = -2
Query: 76 RVNRLDGP*TP---RGVGQPPRPRFEHG 2
R+N+++GP P +GV PP PR E G
Sbjct: 216 RINQINGPAGPAGHKGVRGPPGPRGEAG 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,206,201
Number of Sequences: 27780
Number of extensions: 259273
Number of successful extensions: 1038
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1036
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -