Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1092
         (407 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   1.0  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   1.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   3.1  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   5.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   5.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.1  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   9.4  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 1.0
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = -1

Query: 290 LRQGHGAAPPKRGRQRAYAPPCPG---RVHNGGTSSS 189
           ++ GHG+ P K+ R  + +  C G   R   GG   S
Sbjct: 271 VQPGHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKS 307


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 23.0 bits (47), Expect = 1.3
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 101 HDSPSHKRPGKPPRRSVDPTWGWP 30
           H SP   + G PP  S  P  G P
Sbjct: 28  HQSPQAPQRGSPPNPSQGPPPGGP 51


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 317 GVVASMLGGDESWKAMLDFCECTISHKEA 403
           GV A +  G +S   +LD C   + HK++
Sbjct: 481 GVYAWIGAGRDSDSRLLDLCTKFLMHKDS 509


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 30  WPTPRGVY 53
           WPT RG+Y
Sbjct: 187 WPTGRGIY 194


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = +3

Query: 30  WPTPRGVY 53
           WPT RG+Y
Sbjct: 203 WPTGRGIY 210


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 16/60 (26%), Positives = 24/60 (40%)
 Frame = -2

Query: 337 KHRRHDARQRQVWSYLCDKDTALHLPSGADSERMLRRVQVVSTMVAPRRRLSSYPVQVLS 158
           + ++   +Q+Q        D  +   S A S R L      ST  +PR   S+    VLS
Sbjct: 796 QQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASSTAATLVLS 855


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 11/38 (28%), Positives = 15/38 (39%)
 Frame = -1

Query: 230  PCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDGR 117
            P PG  H+G         + A       +QS P  +GR
Sbjct: 1749 PHPGNGHSGTMGPPVGHPTNASAHSRSGSQSMPRQNGR 1786


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 356 KAMLDFCECTISHKEAA 406
           KAM D   C +SH  A+
Sbjct: 218 KAMSDLVICKLSHSNAS 234


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +2

Query: 356 KAMLDFCECTISHKEAA 406
           KAM D   C +SH  A+
Sbjct: 218 KAMSDLVICKLSHSNAS 234


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 12/45 (26%), Positives = 17/45 (37%)
 Frame = -1

Query: 254 GRQRAYAPPCPGRVHNGGTSSSAQLLSGAGTFQSIRAQSAPAPDG 120
           G Q  Y    PG    G  S +   ++   T  S    ++PA  G
Sbjct: 205 GVQNGYGRHLPGHAQMGRPSYTTATMATTSTPGSGSLPASPADSG 249


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,206
Number of Sequences: 438
Number of extensions: 2969
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)