Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1091
         (675 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7QTI3 Cluster: GLP_251_3885_7112; n=1; Giardia lamblia...    34   2.7  
UniRef50_UPI0000F1F13A Cluster: PREDICTED: similar to microtubul...    33   4.8  

>UniRef50_Q7QTI3 Cluster: GLP_251_3885_7112; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_251_3885_7112 - Giardia lamblia ATCC
           50803
          Length = 1075

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 18/58 (31%), Positives = 32/58 (55%)
 Frame = +1

Query: 28  LILFSILSRLTSKAIPSSPNK*ARVYGAKPEREQRFAESTTGSESRPAEKLSGFRVVS 201
           + LF +L    S + P   N  AR +G KP ++++   +T+G++ R +  L G  +VS
Sbjct: 15  ITLFPVLMSSRSSSPPGRSNTTARTHG-KPHKQKKKRRATSGTKLRASPSLPGSMIVS 71


>UniRef50_UPI0000F1F13A Cluster: PREDICTED: similar to
           microtubule-associated protein 7,; n=1; Danio rerio|Rep:
           PREDICTED: similar to microtubule-associated protein 7,
           - Danio rerio
          Length = 573

 Score = 33.5 bits (73), Expect = 4.8
 Identities = 14/47 (29%), Positives = 28/47 (59%)
 Frame = +2

Query: 86  TNRREFTGLSLRESSASLNLPPDQNRDPPRNSVVSGSFLWDELVIRN 226
           T  ++   L L+ S+ +  + P Q+ +PP N+V++ S+L +   +RN
Sbjct: 239 TEGQDLKKLQLQRSTTTTEIKPKQDTEPPENTVLATSWLQNRSHVRN 285


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 606,340,370
Number of Sequences: 1657284
Number of extensions: 11692968
Number of successful extensions: 27509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 26732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27502
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 52066120554
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)