Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1091
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    28   1.1  
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom...    27   3.3  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   4.3  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    26   5.7  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   7.6  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    25   10.0 
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   10.0 
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   10.0 
SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase |Schizo...    25   10.0 

>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 152 DQNRDPPRNSVVSGSFLWDELVIRNYIENITELRFFLDL 268
           D  +DPPR     G +    +V+R Y +N  + RFF  L
Sbjct: 144 DVRKDPPRKGWKKGPYGRAIVVLRMYNKNTKKTRFFYPL 182


>SPAC3F10.10c |map3||pheromone M-factor receptor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 365

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 651 STLYLFSVFFFASTGWFYSSICLVW 577
           + LYL S+FF  S GW      ++W
Sbjct: 268 TVLYLMSLFFSTSGGWTEKVALILW 292


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 170 PRNSVVSGSFLWDELVIRNYIENITELRFFLD--LRGLLCNKTSI*AISEGRVQNY 331
           P  + + G FL    +   + E IT    FL   L  L C +T +  I+E +VQ Y
Sbjct: 276 PLVAPIVGGFLTKSYLGWRWTEYITSFMGFLSIILIYLFCEETYLKTITENKVQEY 331


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 40  SILSRLTSKAIPSSPNK*ARVYGAKPEREQRFAESTTGSESRPAEKLS 183
           S + R +S  +PSS N   R+      +  R  ES+   E+  A KLS
Sbjct: 61  STIQRTSSLPVPSSSNFKERLNNIGGLKRSRTLESSYEDETETANKLS 108


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 438 PHIRTVFIELVTNRHPPQI-AISTILNARDRPPQP-PT*FCTLPSL 307
           PH+RT++++L     PP I  +  ++N   R   P  + F   PSL
Sbjct: 800 PHLRTLYMDLNRFNRPPDIRRLKRLVNFSFRTQDPEASNFVIQPSL 845


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 14/60 (23%), Positives = 27/60 (45%)
 Frame = +2

Query: 254 FFLDLRGLLCNKTSI*AISEGRVQNYVGGWGGRSRAFKIVDIAICGGCRFVTSSIKTVRI 433
           F L  RG+L   T + +I +   Q++ G    +  + + +  + C G   +    K+ RI
Sbjct: 58  FGLPKRGILKTSTPLSSIKQPNFQSFEGNESEKETSLQELQSSFCSGIENLQHVEKSARI 117


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/57 (21%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = +2

Query: 83  QTNRREFTG--LSLRESSASLNLPPDQNRDPPRNSVVSGSFLWDELVIRNYIENITE 247
           + N+ ++ G  +++ + S S +LPP++  +P  + +      ++EL   +Y++ + E
Sbjct: 450 ELNKNDYEGEEITVSQKSPSPSLPPNELNEPEPDDMDGYKEAFNELRCLSYVQCLFE 506


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 18/47 (38%), Positives = 22/47 (46%)
 Frame = +2

Query: 98   EFTGLSLRESSASLNLPPDQNRDPPRNSVVSGSFLWDELVIRNYIEN 238
            EFTGL     S   NLP  Q   P +    SG     E +IRN+ +N
Sbjct: 1399 EFTGLKPLSPSKISNLPSSQPGSPSKR---SGKM---EALIRNFDQN 1439


>SPACUNK4.16c |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 8/24 (33%), Positives = 17/24 (70%)
 Frame = +2

Query: 119 RESSASLNLPPDQNRDPPRNSVVS 190
           +    +L+LPP +++ PP +SV++
Sbjct: 130 KNDGTNLSLPPSRHQSPPPSSVLA 153


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,824
Number of Sequences: 5004
Number of extensions: 51492
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)