Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1091
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical pr...    30   1.3  
AF016673-4|AAB66125.2|  743|Caenorhabditis elegans Hypothetical ...    29   2.3  
U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four) in...    28   7.0  

>Z83112-2|CAB05539.1|  391|Caenorhabditis elegans Hypothetical
           protein K02B7.2 protein.
          Length = 391

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 352 PPSPTSNIILYSALADCSY*RFIA*QSS*VQKKS*LGNIFNIVANYEFIPQKRP 191
           PP   +N+ LY  L  CS+  ++  +   + KK  +  +  +VA YE I +++P
Sbjct: 4   PPPSLTNVCLYPLLEKCSH--YVLEEFFQIFKKKVMSFLEKLVAKYEPIKEEKP 55


>AF016673-4|AAB66125.2|  743|Caenorhabditis elegans Hypothetical
           protein T06D4.3 protein.
          Length = 743

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -1

Query: 408 VTNRHPPQIAISTILNARDRPPQPPT*FCTLPSLI 304
           VT   PP +  ST+ N+  RPP  P   C  P  +
Sbjct: 61  VTTSRPPNLTTSTLPNSSSRPPSIP--ICDTPECV 93


>U70852-13|AAM98015.1|  788|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 4, isoform b protein.
          Length = 788

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 483 VSLQKQLRSDQVCKTQSIL*VT*RSILSLAFAKLGKLKNKTNQ 611
           V  Q+  R+D+     S+  VT R++   A  KL K +NK NQ
Sbjct: 7   VQSQQNERNDEAVLLNSLRNVTLRNVEKFASVKLPKEQNKRNQ 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,241,064
Number of Sequences: 27780
Number of extensions: 291819
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)