Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1091
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06460.1 68418.m00724 ubiquitin activating enzyme 2 (UBA2) E1...    28   6.6  
At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containi...    27   8.7  
At2g20470.1 68415.m02390 protein kinase, putative contains prote...    27   8.7  

>At5g06460.1 68418.m00724 ubiquitin activating enzyme 2 (UBA2) E1;
           identical to gi:1703477
          Length = 1077

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 128 SASLNLPPDQNRDPPRNSVVSGSFLWDEL-VIRNYIENITELRFFLDLR 271
           ++ LN+   QNR  P    V     W+ L V+ N ++N+T  R ++D R
Sbjct: 561 NSRLNIDALQNRVGPETENVFDDSFWENLTVVVNALDNVT-ARLYVDSR 608


>At3g53360.1 68416.m05889 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 768

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 260 LDLRGLLCNKTSI*AISEG-RVQNYVGGWG 346
           + LR LLC +T   A+S+G ++ +Y+  WG
Sbjct: 372 ISLRSLLCAQTKPMALSQGMQIHSYIIKWG 401


>At2g20470.1 68415.m02390 protein kinase, putative contains protein
           kinase domain, Pfam:PF00069
          Length = 596

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 98  EFTGLSLRESSASLNLPPDQNRDPPRNSVVSGSFL 202
           E+ G S    S+     P  +R PP   VV GSFL
Sbjct: 543 EYNGSSETSDSSETTSRPPCDRPPPAPPVVQGSFL 577


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,241,562
Number of Sequences: 28952
Number of extensions: 269290
Number of successful extensions: 657
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)