Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1090
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    28   1.1  
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces...    26   4.4  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    26   5.8  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   7.6  

>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +2

Query: 152 DQNRDPPRNSVVSGSFLWDELVIRNYIENITELRFFLDL 268
           D  +DPPR     G +    +V+R Y +N  + RFF  L
Sbjct: 144 DVRKDPPRKGWKKGPYGRAIVVLRMYNKNTKKTRFFYPL 182


>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 580

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = +2

Query: 170 PRNSVVSGSFLWDELVIRNYIENITELRFFLD--LRGLLCNKTSI*AISEGRVQNY 331
           P  + + G FL    +   + E IT    FL   L  L C +T +  I+E +VQ Y
Sbjct: 276 PLVAPIVGGFLTKSYLGWRWTEYITSFMGFLSIILIYLFCEETYLKTITENKVQEY 331


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +1

Query: 40  SILSRLTSKAIPSSPNK*ARVYGAKPEREQRFAESTTGSESRPAEKLS 183
           S + R +S  +PSS N   R+      +  R  ES+   E+  A KLS
Sbjct: 61  STIQRTSSLPVPSSSNFKERLNNIGGLKRSRTLESSYEDETETANKLS 108


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 438 PHIRTVFIELVTNRHPPQI-AISTILNARDRPPQP-PT*FCTLPSL 307
           PH+RT++++L     PP I  +  ++N   R   P  + F   PSL
Sbjct: 800 PHLRTLYMDLNRFNRPPDIRRLKRLVNFSFRTQDPEASNFVIQPSL 845


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,020
Number of Sequences: 5004
Number of extensions: 51171
Number of successful extensions: 122
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)