Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1090
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232...    29   2.6  
09_04_0687 + 19465594-19465780,19465994-19466022,19466731-194668...    28   7.9  
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359...    28   7.9  
03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500           28   7.9  

>01_06_1504 +
           37821676-37821778,37821855-37822072,37822713-37823242,
           37824040-37824483,37824923-37825616
          Length = 662

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 403 KSTSPTNCNINNFKCARPPSPTSNI-ILYSAL 311
           K   P +CN     C  PPSPTS +   Y+AL
Sbjct: 121 KHPRPASCNGGATACLPPPSPTSRLAFFYAAL 152


>09_04_0687 +
           19465594-19465780,19465994-19466022,19466731-19466803,
           19467237-19467311,19467583-19467644,19467727-19467795,
           19468447-19468475,19468553-19468760,19468867-19469100,
           19469591-19470598
          Length = 657

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = -3

Query: 435 HIRTVFIELVTNRHPPQIAISTI--LNARDRPPQPPT*FCTLPSLIAH 298
           H  ++ + +  N  PP ++   I  L+   RPP   +   T PSL+AH
Sbjct: 507 HQPSIHVRVSPNTSPPLLSSPKIKELHELPRPPANASKHTTFPSLVAH 554


>06_01_0503 -
           3596664-3596837,3597647-3598069,3598362-3598595,
           3598720-3598993,3599390-3599523,3599572-3599634,
           3599759-3599846,3599919-3599989,3600898-3601010,
           3601836-3602004,3602580-3602671,3602819-3603295,
           3603736-3604090
          Length = 888

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = -1

Query: 203 TETTLKPLSFSAGRDSDPVVDSAKRCSLSGLAP*TLAYLFGEDGIAFEVNRDKIENKMSS 24
           T++TL   SFS     D  +++      +     T   +   DG  F +N DK+ +K S+
Sbjct: 131 TQSTLLDFSFSRKATDDYALNNLNTSDEAEHMEPTDGNV-SSDGAFFSLNNDKVNSKGSA 189

Query: 23  QSKSQNC 3
            + S  C
Sbjct: 190 NASSPGC 196


>03_01_0400 - 3102325-3102519,3103009-3103455,3105063-3105500
          Length = 359

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +1

Query: 88  K*ARVYGAKPEREQRFAESTTGSESRPAEKLS--GFRVVSVG 207
           K +RVY A PE  ++   ST  S+    ++ S  GFRVV +G
Sbjct: 266 KVSRVYAAPPEERKKRIYSTAPSKFTTIDQNSGLGFRVVRMG 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,112,485
Number of Sequences: 37544
Number of extensions: 320478
Number of successful extensions: 794
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 782
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)