Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1089
(745 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 207 1e-54
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 191 8e-50
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 139 4e-34
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 101 1e-22
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 52 9e-08
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 46 8e-06
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 45 1e-05
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 38 0.002
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 38 0.002
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 38 0.002
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 36 0.005
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 35 0.011
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 35 0.011
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 35 0.011
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 31 0.23
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 31 0.23
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 30 0.40
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 30 0.40
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma... 29 0.92
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 27 2.1
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 27 2.8
SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex ... 25 8.6
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 8.6
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 207 bits (506), Expect = 1e-54
Identities = 97/170 (57%), Positives = 125/170 (73%)
Frame = +3
Query: 204 FRGLLGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDL 383
F+ L G REMRIL++GLD AGKTTILYKL++GE+VTTIPTIGFNVE V Y+N+ F VWD+
Sbjct: 9 FQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDV 68
Query: 384 GGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVVLANKQ 563
GGQ IRP WR Y+ NT II+VVDS DR+RI + +EL ML E+EL +A+L+V ANKQ
Sbjct: 69 GGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQ 128
Query: 564 DMAGCLTVAEVHQALGLDALRDRTFQIFKTSAVRGEGLDQAMDWLSNALQ 713
D+ + AE+ LGL +LR R + I T A G+GL + ++WLS L+
Sbjct: 129 DLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLK 178
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 191 bits (466), Expect = 8e-50
Identities = 89/171 (52%), Positives = 121/171 (70%)
Frame = +3
Query: 189 GLFSYFRGLLGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKF 368
G F L +EMRIL+LGLD AGKTTILYKL++ + V TIPT+GFNVE VTYKN+KF
Sbjct: 8 GFSKPFSRLFSNKEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKF 67
Query: 369 QVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVV 548
VWD+GGQ IRP WR Y+ T +I+VVDSAD +RI ++ EL ++ + E+ + +L+V
Sbjct: 68 NVWDVGGQDKIRPLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLV 127
Query: 549 LANKQDMAGCLTVAEVHQALGLDALRDRTFQIFKTSAVRGEGLDQAMDWLS 701
LANKQD+ G L+ A++ L LD L+DR + + T A+ G+GL + + WLS
Sbjct: 128 LANKQDLPGALSPAQITDVLQLDKLKDRLWNVQPTCALTGDGLLEGLAWLS 178
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 139 bits (336), Expect = 4e-34
Identities = 68/169 (40%), Positives = 107/169 (63%)
Frame = +3
Query: 216 LGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQT 395
L RE+R+L+LGLD AGKTTIL L +V PT GF + + + L+F +WD+GGQ
Sbjct: 12 LKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQK 71
Query: 396 SIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVVLANKQDMAG 575
++R +W+ Y+ +T+AII+VVDS D R+ ++ L +L EE+L ++VLANK D++G
Sbjct: 72 TLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSG 131
Query: 576 CLTVAEVHQALGLDALRDRTFQIFKTSAVRGEGLDQAMDWLSNALQARK 722
L+ E+ + L + + ++IF SA+ G + A+ WL+N L+ K
Sbjct: 132 ALSSEEISKILNISKYKSSHWRIFSVSALTGLNIKDAISWLANDLKEIK 180
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 101 bits (241), Expect = 1e-22
Identities = 57/169 (33%), Positives = 87/169 (51%), Gaps = 10/169 (5%)
Frame = +3
Query: 225 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKFQVWDLGGQTSIR 404
+ ++L LGLD AGKTT+L+ L+ + PT+ E++ N++F +DLGG R
Sbjct: 19 KHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELAIGNVRFTTFDLGGHQQAR 78
Query: 405 PYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVVLANKQDMAGCLT 584
WR Y+ + I+Y+VD D +R+ SK EL +L EELA ++L NK D G ++
Sbjct: 79 RLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELARVPFLILGNKIDAPGAIS 138
Query: 585 VAEVHQALGLDALRD----------RTFQIFKTSAVRGEGLDQAMDWLS 701
E+ ALGL R ++F S V +G + WL+
Sbjct: 139 EDELKAALGLYQTTGKGVSKPVPGIRPIEVFMCSVVLRQGYGEGFKWLA 187
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 52.0 bits (119), Expect = 9e-08
Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 6/168 (3%)
Frame = +3
Query: 234 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVEQVTY----KNLKFQVWDLGGQTS 398
++L++G G GK+ +L + + I TIG + + T+ K +K Q+WD GQ
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 399 IRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLR-EEELANAILVVLANKQDMAG 575
R YY II V D D+D K L + R E N +LV NK DM
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLV--GNKSDM-- 125
Query: 576 CLTVAEVHQALGLDALRDRTFQIFKTSAVRGEGLDQAMDWLSNALQAR 719
+ V ++ + +TSA ++QA +S ++ R
Sbjct: 126 -VDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQIKER 172
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 45.6 bits (103), Expect = 8e-06
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 5/156 (3%)
Frame = +3
Query: 234 RILILGLDGAGKTTILYKLQVGEV-VTTIPTIG--FNVEQVTYKN--LKFQVWDLGGQTS 398
+ +++G G GK+ +L + E + + TIG F + N +K Q+WD GQ
Sbjct: 12 KTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDTAGQER 71
Query: 399 IRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVVLANKQDMAGC 578
R YY + V D + + + LRE +N +++++ NK D+
Sbjct: 72 YRAITSAYYRGAVGALIVYDITKQSSFD-NVGRWLKELREHADSNIVIMLVGNKTDLLH- 129
Query: 579 LTVAEVHQALGLDALRDRTFQIFKTSAVRGEGLDQA 686
L +A A + +F +TSA+ +++A
Sbjct: 130 LRAVSTEEAQAFAAENNLSF--IETSAMDASNVEEA 163
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 45.2 bits (102), Expect = 1e-05
Identities = 36/169 (21%), Positives = 71/169 (42%), Gaps = 5/169 (2%)
Frame = +3
Query: 231 MRILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVE----QVTYKNLKFQVWDLGGQT 395
+++L++G G GK+ +L + + I TIG + + ++ K +K Q+WD GQ
Sbjct: 10 IKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQE 69
Query: 396 SIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANAILVVLANKQDMAG 575
R YY I+ + D D+ + + + + N +++ NK D
Sbjct: 70 RFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSN-VEQHASENVYKILIGNKCD--- 125
Query: 576 CLTVAEVHQALGLDALRDRTFQIFKTSAVRGEGLDQAMDWLSNALQARK 722
C +V G + + + SA +D+A L+ ++ +K
Sbjct: 126 CEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQK 174
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 37.9 bits (84), Expect = 0.002
Identities = 38/162 (23%), Positives = 66/162 (40%), Gaps = 8/162 (4%)
Frame = +3
Query: 231 MRILILGLDGAGKTTILYKLQVGEVVTTI-PTIG--FNVEQVTY--KNLKFQVWDLGGQT 395
++++ILG G GKT+I+ + + TIG F ++V K + Q+WD GQ
Sbjct: 9 LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQE 68
Query: 396 SIRPYWRCYYGNTDAIIYVVD---SADRDRIGISKDELVHMLREEELANAILVVLANKQD 566
+ +Y D + V D S + + +DE + ++L NK D
Sbjct: 69 RFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVD 128
Query: 567 MAGCLTVAEVHQALGLDALRDRTFQIFKTSAVRGEGLDQAMD 692
+ + +AL R F+TSA + +A +
Sbjct: 129 VEEQKRMVSKSKALAFCQARGE-IPYFETSAKEAINVQEAFE 169
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 37.9 bits (84), Expect = 0.002
Identities = 38/128 (29%), Positives = 60/128 (46%), Gaps = 15/128 (11%)
Frame = +3
Query: 231 MRILILGLDGAGKTTILYKL-------QVGEVV-----TTIPTIGFNVEQVTYKNLKFQV 374
++I++ G G GK+ +L + QV V + I ++G +Q K +K Q+
Sbjct: 10 VKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQ---KRIKLQI 66
Query: 375 WDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLRE-EELA-NAILVV 548
WD GQ R R YY + V D ++D S +EL L + +A + I VV
Sbjct: 67 WDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKD----SFEELSSWLSDIRAMAPSTICVV 122
Query: 549 LA-NKQDM 569
LA +K D+
Sbjct: 123 LAGSKSDL 130
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 37.9 bits (84), Expect = 0.002
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 8/134 (5%)
Frame = +3
Query: 231 MRILILGLDGAGKTTILYKLQVGEVVTTI-PTIG--FNVEQVTY--KNLKFQVWDLGGQT 395
++++ILG G GKT ++ + + TIG F + V K + Q+WD GQ
Sbjct: 9 LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQE 68
Query: 396 SIRPYWRCYYGNTD--AIIY-VVDSADRDRIGISKDELVHMLREEELANAILVVLANKQD 566
+ +Y D I+Y V +S D + + E ++ ++E A ++V N+ D
Sbjct: 69 RFQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIV-GNQID 127
Query: 567 MAGCLTVAEVHQAL 608
+H+AL
Sbjct: 128 KDASKRAVSLHRAL 141
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 36.3 bits (80), Expect = 0.005
Identities = 27/118 (22%), Positives = 49/118 (41%)
Frame = +3
Query: 357 NLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLREEELANA 536
++K ++WD GQ + YY N + I V D + +K + + R+
Sbjct: 63 SVKLEIWDTAGQERYKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAP-EGI 121
Query: 537 ILVVLANKQDMAGCLTVAEVHQALGLDALRDRTFQIFKTSAVRGEGLDQAMDWLSNAL 710
++ + NK D+A E A A + F F+TSA E +++ ++ L
Sbjct: 122 VIALAGNKLDLAQERRAVEKADAEAYAAEANLLF--FETSAKTAENVNELFTAIAKKL 177
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 35.1 bits (77), Expect = 0.011
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +3
Query: 321 TIGFNVEQVTYKNLKFQVWDLGGQTSIRPYWRCYYGNTDAIIYVVDSADRDR 476
T+G + T +L+ +++D+GGQ + R W + N ++II+ V D D+
Sbjct: 179 TLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYDK 230
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 35.1 bits (77), Expect = 0.011
Identities = 39/166 (23%), Positives = 64/166 (38%), Gaps = 7/166 (4%)
Frame = +3
Query: 234 RILILGLDGAGKTTILYKLQVGEVVTT-IPTIGFNVE----QVTYKNLKFQVWDLGGQTS 398
+++++G G GKTT + + GE I T+G V + + F VWD GQ
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 399 IRPYWRCYYGNTDAIIYVVDSADRDRIGISKDELVHMLRE--EELANAILVVLANKQDMA 572
+ YY I + D R I+ + H R+ N +V+ NK D+
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSR----ITYKNVPHWWRDLVRVCENIPIVLCGNKVDVK 126
Query: 573 GCLTVAEVHQALGLDALRDRTFQIFKTSAVRGEGLDQAMDWLSNAL 710
+A + R + Q + SA ++ WL+ L
Sbjct: 127 -----ERKVKAKAITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 167
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 35.1 bits (77), Expect = 0.011
Identities = 37/149 (24%), Positives = 71/149 (47%), Gaps = 9/149 (6%)
Frame = +3
Query: 189 GLFSYFRGLLGAREMRILILGLDGAGKTTILYKLQVGEVVTTIPTIGFNVEQVTYKNLKF 368
G+F + R + + + ++G +GKT++ +L E TT+P+I N E V K+
Sbjct: 25 GIF-FTRKTIQKKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPN-EAV----WKY 78
Query: 369 QVW--DLGGQTSIRPYWRCYYG---NTDAIIYVVDSA--DRD--RIGISKDELVHMLREE 521
W DL G + + + N A+++V++SA DRD +G+ + + R+
Sbjct: 79 GAWLVDLPGHPRAKRWITTKFSGNYNVKAVVFVLNSATIDRDVHEVGLMLFDTILKCRKH 138
Query: 522 ELANAILVVLANKQDMAGCLTVAEVHQAL 608
+ + L++ NK D+ ++ Q L
Sbjct: 139 HVPH--LLIACNKFDLFTAQPAEKIQQLL 165
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 30.7 bits (66), Expect = 0.23
Identities = 20/93 (21%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Frame = +3
Query: 231 MRILILGLDGAGKTTILYKLQVG---EVVTTIPTIGFNVEQVTYKN--LKFQVWDLGGQT 395
+++ ++G GKT+++ G E T + F + ++ +N + F +WDLGGQ
Sbjct: 11 IKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSIWDLGGQR 70
Query: 396 SIRPYWRCYYGNTDAIIYVVDSADRDRIGISKD 494
+ AI+++ D + + + K+
Sbjct: 71 EFVNMLPMVCNDAVAILFMFDLSRKSTLNSIKE 103
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 30.7 bits (66), Expect = 0.23
Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Frame = +3
Query: 234 RILILGLDGAGKTTILYKLQVGEVVTTI-PTIGFNVEQ---VTYKNLKFQVWDLGGQTSI 401
+I+ILG AGKT++L G PTI N V +++ +WD GQ
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTAGQEEY 74
Query: 402 RPYWRCYYGNTDAII--YVVDSAD 467
Y +T I+ + VDS D
Sbjct: 75 DQLRSLSYSDTHVIMICFAVDSRD 98
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 29.9 bits (64), Expect = 0.40
Identities = 23/90 (25%), Positives = 41/90 (45%), Gaps = 10/90 (11%)
Frame = +3
Query: 234 RILILGLDGAGKTT---ILYKLQVGEVVTTI-PTIGFNVEQVTYK-NLKFQVWDLGGQTS 398
++L++G G+GK++ I++ V + + TI V + NL +WD GGQ +
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLVLNLWDCGGQEA 63
Query: 399 IRPYWRC-----YYGNTDAIIYVVDSADRD 473
+ + N +IYV D R+
Sbjct: 64 FMENYLSAQRDHIFRNVQVLIYVFDVESRE 93
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 29.9 bits (64), Expect = 0.40
Identities = 13/25 (52%), Positives = 21/25 (84%)
Frame = +3
Query: 234 RILILGLDGAGKTTILYKLQVGEVV 308
R+ ILG +GAGK+T++ K+ +GEV+
Sbjct: 721 RVAILGPNGAGKSTLI-KVLIGEVI 744
>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 630
Score = 28.7 bits (61), Expect = 0.92
Identities = 12/34 (35%), Positives = 23/34 (67%)
Frame = +3
Query: 225 REMRILILGLDGAGKTTILYKLQVGEVVTTIPTI 326
+E+R++I G G GK++++ L + VT+IP +
Sbjct: 2 KEVRVVICGDQGVGKSSLISALIQEDNVTSIPKV 35
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 219 GAREMRILILGLDGAGKTTILYKLQV 296
G ++++L+LG +GKTTI+ ++++
Sbjct: 71 GGNDIKVLLLGAGDSGKTTIMKQMRL 96
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 491 FRYSYSIPVS*VYNIYYCICVAIVTSPIRPN 399
F ++Y++ S VYN + +C + T+P + N
Sbjct: 494 FDFTYNLSESEVYNTVFNLCDELYTTPCKKN 524
>SPAC17C9.01c |nuc2|apc3, SPAC1851.01|anaphase-promoting complex
subunit Apc3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 8.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Frame = -2
Query: 135 YALRLH-IKDF*NCFFVLIYTWSTLNILFNNKYCTFYRNLSHLTC 4
Y+ RLH I+D ++L Y+ LN+ +N Y R +SH+ C
Sbjct: 24 YSERLHAIEDSNESLYLLAYS-HFLNLDYNIVYDLLDRVISHVPC 67
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -2
Query: 162 NLLLLIRNVYALRLHIKDF*NCFFVLIYTWSTLNILFNNKYCTF 31
N + +R+ + R HI C ++ WS + L NN Y F
Sbjct: 422 NKCIQLRDYFDYRKHI-----CIVTDLFGWSVFDFLKNNNYIPF 460
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,173,220
Number of Sequences: 5004
Number of extensions: 68824
Number of successful extensions: 182
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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