Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1088
(612 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q94901 Cluster: RNA-binding protein lark; n=8; Endopter... 43 0.005
UniRef50_Q7MY62 Cluster: Similarities with formyltransferase; n=... 35 1.3
UniRef50_UPI0000F31CBA Cluster: UPI0000F31CBA related cluster; n... 34 2.3
UniRef50_Q92RD9 Cluster: Putative uncharacterized protein; n=4; ... 33 7.1
UniRef50_Q23B08 Cluster: Protein kinase domain containing protei... 33 7.1
UniRef50_Q20027 Cluster: Cholesterol 25-hydroxylase-like protein... 33 7.1
UniRef50_UPI000023EE54 Cluster: hypothetical protein FG09330.1; ... 32 9.3
UniRef50_Q1RRB5 Cluster: Putative uncharacterized protein SAML02... 32 9.3
UniRef50_Q7XGM5 Cluster: Expressed protein; n=1; Oryza sativa (j... 32 9.3
>UniRef50_Q94901 Cluster: RNA-binding protein lark; n=8;
Endopterygota|Rep: RNA-binding protein lark - Drosophila
melanogaster (Fruit fly)
Length = 352
Score = 43.2 bits (97), Expect = 0.005
Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
Frame = -1
Query: 384 SMRSSYDPMYSRRSPPPGPQMSRGM----------YEDFSRDTFDD 277
S+ YD M+SRRSPPP P+ S GM YEDFSRD FD+
Sbjct: 287 SVSRGYDTMFSRRSPPP-PRSSNGMSRYGSPTPHGYEDFSRDAFDE 331
>UniRef50_Q7MY62 Cluster: Similarities with formyltransferase; n=1;
Photorhabdus luminescens subsp. laumondii|Rep:
Similarities with formyltransferase - Photorhabdus
luminescens subsp. laumondii
Length = 390
Score = 35.1 bits (77), Expect = 1.3
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 45 DIYFNYLHHKCSQLYSFIHKVKTLSNPFTHLQLSLH 152
DIY NY+ H C+ + +I K+ +N F++ Q S H
Sbjct: 148 DIYLNYISHSCTLIEDYIEKIIKNNNIFSNPQKSKH 183
>UniRef50_UPI0000F31CBA Cluster: UPI0000F31CBA related cluster; n=2;
Bos taurus|Rep: UPI0000F31CBA UniRef100 entry - Bos
Taurus
Length = 280
Score = 34.3 bits (75), Expect = 2.3
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +2
Query: 470 APLDPPNSSPRDAPPTG*RRSNKSRG 547
AP PP+S PRD+PP G R+N +G
Sbjct: 95 APRGPPHSGPRDSPPPGAPRTNPLQG 120
>UniRef50_Q92RD9 Cluster: Putative uncharacterized protein; n=4;
Rhizobiaceae|Rep: Putative uncharacterized protein -
Rhizobium meliloti (Sinorhizobium meliloti)
Length = 128
Score = 32.7 bits (71), Expect = 7.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = -2
Query: 503 HEGWNWADLEELAVTSFLRPYAANPCHPCL 414
H GW+WA+ +++ ++ +R + P HP L
Sbjct: 26 HHGWSWAEADQVELSGTIREISMAPPHPTL 55
>UniRef50_Q23B08 Cluster: Protein kinase domain containing protein;
n=1; Tetrahymena thermophila SB210|Rep: Protein kinase
domain containing protein - Tetrahymena thermophila SB210
Length = 2828
Score = 32.7 bits (71), Expect = 7.1
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Frame = +3
Query: 75 CSQLYSFIHKVKTLSNPFTHLQLSLH-YF*NVPKVQPKY-QMSF--STTILSYINK 230
CS Y H+ + + + TH+QL LH YF P+++ KY Q +F T +L++++K
Sbjct: 2480 CSYDYFIEHQDRLMLSGITHIQLDLHIYFSINPQLKSKYFQKTFLSLTILLTHLSK 2535
>UniRef50_Q20027 Cluster: Cholesterol 25-hydroxylase-like protein;
n=2; Caenorhabditis|Rep: Cholesterol 25-hydroxylase-like
protein - Caenorhabditis elegans
Length = 300
Score = 32.7 bits (71), Expect = 7.1
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +3
Query: 27 AYEKTYDIYFNYLHHKCSQLYSFIHKVKTL-SNPFTHLQLSLHYF 158
A++ TY +F+Y++HK LY + H V + S+PF LH F
Sbjct: 140 AFDFTY-FWFHYINHKVKWLYRWCHSVHHMYSSPFAASAQHLHPF 183
>UniRef50_UPI000023EE54 Cluster: hypothetical protein FG09330.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG09330.1 - Gibberella zeae PH-1
Length = 294
Score = 32.3 bits (70), Expect = 9.3
Identities = 28/79 (35%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Frame = -1
Query: 540 DLFERRYPVGGASRGLELGGSR----GARGDFVSXXXXXXXXXXXXXXXXXRSGMGSMR- 376
DL++RR GG RG GGSR G+RG S S GS R
Sbjct: 40 DLYKRRGGGGGGGRGGSSGGSRGGSSGSRGGSSSSGSRGGSSGGSSGGSSRGSSSGSSRP 99
Query: 375 SSYDPMYSRRSPPPGPQMS 319
S S R+P GPQ S
Sbjct: 100 GSGSGSSSGRTPARGPQPS 118
>UniRef50_Q1RRB5 Cluster: Putative uncharacterized protein SAML0244;
n=1; Streptomyces ambofaciens ATCC 23877|Rep: Putative
uncharacterized protein SAML0244 - Streptomyces
ambofaciens ATCC 23877
Length = 227
Score = 32.3 bits (70), Expect = 9.3
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = -2
Query: 488 WADLEELAVTSFLRPYAANPCHPCLIYLHCGAEWVP*DLPMILCTA 351
W + F +A C L YL GAEW+P + ++LC A
Sbjct: 27 WKSVRRTVAVVFFG-WATAACTAVLAYLMLGAEWIPITVGVVLCLA 71
>UniRef50_Q7XGM5 Cluster: Expressed protein; n=1; Oryza sativa
(japonica cultivar-group)|Rep: Expressed protein - Oryza
sativa subsp. japonica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 9.3
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +1
Query: 322 HLGSWWGASAAVHRIIGRSHGTHSAPQW 405
HL SWWG + +G GT SA +W
Sbjct: 102 HLASWWGGPRSTSGALGGFSGTGSATRW 129
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,615,385
Number of Sequences: 1657284
Number of extensions: 9847734
Number of successful extensions: 32278
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 30265
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32247
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 43977329078
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -