Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1088
         (612 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U59476-1|AAB07067.1|  352|Drosophila melanogaster RNA-binding pr...    43   3e-04
AY061458-1|AAL29006.1|  352|Drosophila melanogaster LD40792p pro...    43   3e-04
AE014296-1235|AAN12056.1|  352|Drosophila melanogaster CG8597-PE...    43   3e-04
AE014296-1234|AAN12055.1|  352|Drosophila melanogaster CG8597-PD...    43   3e-04
AE014296-1233|AAN12054.1|  352|Drosophila melanogaster CG8597-PC...    43   3e-04
AE014296-1232|AAN12053.1|  352|Drosophila melanogaster CG8597-PB...    43   3e-04
AE014296-1231|AAF50578.1|  352|Drosophila melanogaster CG8597-PA...    43   3e-04

>U59476-1|AAB07067.1|  352|Drosophila melanogaster RNA-binding
           protein lark protein.
          Length = 352

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
 Frame = -1

Query: 384 SMRSSYDPMYSRRSPPPGPQMSRGM----------YEDFSRDTFDD 277
           S+   YD M+SRRSPPP P+ S GM          YEDFSRD FD+
Sbjct: 287 SVSRGYDTMFSRRSPPP-PRSSNGMSRYGSPTPHGYEDFSRDAFDE 331


>AY061458-1|AAL29006.1|  352|Drosophila melanogaster LD40792p
           protein.
          Length = 352

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
 Frame = -1

Query: 384 SMRSSYDPMYSRRSPPPGPQMSRGM----------YEDFSRDTFDD 277
           S+   YD M+SRRSPPP P+ S GM          YEDFSRD FD+
Sbjct: 287 SVSRGYDTMFSRRSPPP-PRSSNGMSRYGSPTPHGYEDFSRDAFDE 331


>AE014296-1235|AAN12056.1|  352|Drosophila melanogaster CG8597-PE,
           isoform E protein.
          Length = 352

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
 Frame = -1

Query: 384 SMRSSYDPMYSRRSPPPGPQMSRGM----------YEDFSRDTFDD 277
           S+   YD M+SRRSPPP P+ S GM          YEDFSRD FD+
Sbjct: 287 SVSRGYDTMFSRRSPPP-PRSSNGMSRYGSPTPHGYEDFSRDAFDE 331


>AE014296-1234|AAN12055.1|  352|Drosophila melanogaster CG8597-PD,
           isoform D protein.
          Length = 352

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
 Frame = -1

Query: 384 SMRSSYDPMYSRRSPPPGPQMSRGM----------YEDFSRDTFDD 277
           S+   YD M+SRRSPPP P+ S GM          YEDFSRD FD+
Sbjct: 287 SVSRGYDTMFSRRSPPP-PRSSNGMSRYGSPTPHGYEDFSRDAFDE 331


>AE014296-1233|AAN12054.1|  352|Drosophila melanogaster CG8597-PC,
           isoform C protein.
          Length = 352

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
 Frame = -1

Query: 384 SMRSSYDPMYSRRSPPPGPQMSRGM----------YEDFSRDTFDD 277
           S+   YD M+SRRSPPP P+ S GM          YEDFSRD FD+
Sbjct: 287 SVSRGYDTMFSRRSPPP-PRSSNGMSRYGSPTPHGYEDFSRDAFDE 331


>AE014296-1232|AAN12053.1|  352|Drosophila melanogaster CG8597-PB,
           isoform B protein.
          Length = 352

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
 Frame = -1

Query: 384 SMRSSYDPMYSRRSPPPGPQMSRGM----------YEDFSRDTFDD 277
           S+   YD M+SRRSPPP P+ S GM          YEDFSRD FD+
Sbjct: 287 SVSRGYDTMFSRRSPPP-PRSSNGMSRYGSPTPHGYEDFSRDAFDE 331


>AE014296-1231|AAF50578.1|  352|Drosophila melanogaster CG8597-PA,
           isoform A protein.
          Length = 352

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 24/46 (52%), Positives = 28/46 (60%), Gaps = 10/46 (21%)
 Frame = -1

Query: 384 SMRSSYDPMYSRRSPPPGPQMSRGM----------YEDFSRDTFDD 277
           S+   YD M+SRRSPPP P+ S GM          YEDFSRD FD+
Sbjct: 287 SVSRGYDTMFSRRSPPP-PRSSNGMSRYGSPTPHGYEDFSRDAFDE 331


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,097,541
Number of Sequences: 53049
Number of extensions: 480544
Number of successful extensions: 1648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1640
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2497240350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)