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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1087
         (738 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q38ZH2 Cluster: Hypothetical cell surface protein; n=1;...    33   5.5  
UniRef50_Q036T8 Cluster: Surface antigen; n=1; Lactobacillus cas...    33   9.7  

>UniRef50_Q38ZH2 Cluster: Hypothetical cell surface protein; n=1;
           Lactobacillus sakei subsp. sakei 23K|Rep: Hypothetical
           cell surface protein - Lactobacillus sakei subsp. sakei
           (strain 23K)
          Length = 424

 Score = 33.5 bits (73), Expect = 5.5
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = +2

Query: 5   GDLTMLHQVIIALAVFTYVDGSGIGHAPATGPVVTSASSQYFERTFNR 148
           GDL     V  A  V  Y+      HAPA G  VT+ S QY++  F R
Sbjct: 375 GDLVFWGGVGSAHHVGIYIGNGSYVHAPAPGQSVTTMSMQYYKPDFGR 422


>UniRef50_Q036T8 Cluster: Surface antigen; n=1; Lactobacillus casei
           ATCC 334|Rep: Surface antigen - Lactobacillus casei
           (strain ATCC 334)
          Length = 400

 Score = 32.7 bits (71), Expect = 9.7
 Identities = 20/48 (41%), Positives = 22/48 (45%)
 Frame = +2

Query: 5   GDLTMLHQVIIALAVFTYVDGSGIGHAPATGPVVTSASSQYFERTFNR 148
           GDL     V  A  V  Y+ G    HAPA G  VT  S  YF  +F R
Sbjct: 351 GDLVFWGGVGSAYHVGIYIGGGQYLHAPAPGQNVTIQSMAYFAPSFGR 398


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 551,948,926
Number of Sequences: 1657284
Number of extensions: 9330986
Number of successful extensions: 66732
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60900
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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