Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1087
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   1.9  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   3.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   3.4  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    23   3.4  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   5.9  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 308 QQFIHVPPQQPVFTPQHA 361
           QQ +H PP  P F  Q+A
Sbjct: 428 QQMMHRPPGDPAFHNQYA 445


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 302 PPQQFIHVPPQQPVFTPQHAV 364
           PP    H PP+ PV T  H +
Sbjct: 737 PPPHPHHQPPRNPVGTNPHDI 757


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +2

Query: 302 PPQQFIHVPPQQPVFTPQHAV 364
           PP    H PP+ PV T  H +
Sbjct: 629 PPPHPHHQPPRNPVGTNPHDI 649


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +1

Query: 583 ERNDNSCANNTNNGSHH 633
           ++N+N+ A N  N  HH
Sbjct: 309 QQNNNNAATNNQNHHHH 325


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 317 IHVPPQQPVFTPQHA 361
           +H PP  PV+T  +A
Sbjct: 160 LHYPPPPPVYTHHYA 174


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,709
Number of Sequences: 336
Number of extensions: 2318
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)