Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1086
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    26   3.7  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   6.5  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   8.6  

>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -2

Query: 379 HLKTVVTEFVHFAMYTTCYKIP 314
           HL T++++FVH   +T   K+P
Sbjct: 451 HLSTIISKFVHDYTWTLIGKVP 472


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 218 YLFYLIIVYFNSFPIFNTL 162
           +L  + IVYF+SFPI + L
Sbjct: 138 FLSQIFIVYFSSFPILHFL 156


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 254 HDSLLGLSEFLALIINYIFTGYFVTRCIHSKMNKF 358
           +DSL  LS FL  I +   TGY  + C+ + +  F
Sbjct: 100 YDSLKLLSPFLRTIKSPRMTGYITSLCLSAILKFF 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,487
Number of Sequences: 5004
Number of extensions: 32980
Number of successful extensions: 89
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)