Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1086
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0455 + 3266123-3266258,3266348-3266670,3267083-3267661,326...    28   5.0  
03_04_0117 + 17411064-17411955,17412111-17413543                       27   6.5  

>02_01_0455 +
           3266123-3266258,3266348-3266670,3267083-3267661,
           3267866-3268336
          Length = 502

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 14  FFNYFISNIFLILNCHL 64
           FF  FIS IFL L CHL
Sbjct: 418 FFTAFISQIFLTLLCHL 434


>03_04_0117 + 17411064-17411955,17412111-17413543
          Length = 774

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -2

Query: 379 HLKTVVTEFVHFAMYTTCYKIPRKNII 299
           HLKT    F++F+++   YKI RKN++
Sbjct: 388 HLKTC---FLYFSIFPEDYKIKRKNVV 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,502,525
Number of Sequences: 37544
Number of extensions: 155721
Number of successful extensions: 214
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)