Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1086
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021501-1|CAA16414.2|  352|Caenorhabditis elegans Hypothetical ...    29   2.6  
AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical ...    27   7.8  

>AL021501-1|CAA16414.2|  352|Caenorhabditis elegans Hypothetical
           protein Y61B8A.1 protein.
          Length = 352

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -1

Query: 236 LTERPTYLFYLIIVYFNSFPIFNTLLLASDVCM 138
           L ER  ++F +  VYF SFP+F    L   +C+
Sbjct: 207 LIERFIWIFPIFGVYFASFPLFQVSTLIYYICI 239


>AL032632-5|CAA21585.1|  297|Caenorhabditis elegans Hypothetical
           protein Y11D7A.9 protein.
          Length = 297

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -1

Query: 266 VSCHVRESDYLTERPTYLFYLIIVYFNSFPIFNTLLLASDVCM*RNI*TW 117
           + CH     YL       +YL I++ + + +   +L+AS +   R   TW
Sbjct: 190 IFCHAHSLYYLNPYGRLSYYLKILFTSLYVLSTPILIASFILYWRKCITW 239


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,531,293
Number of Sequences: 27780
Number of extensions: 176642
Number of successful extensions: 398
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)