Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1085
         (637 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    48   1e-04
UniRef50_Q2IHS3 Cluster: Putative uncharacterized protein precur...    34   3.3  
UniRef50_Q4L8V4 Cluster: Sensory transduction protein lytR; n=16...    33   4.4  
UniRef50_UPI00006CA495 Cluster: RNA binding motif protein; n=1; ...    33   5.8  
UniRef50_A4RP26 Cluster: Putative uncharacterized protein; n=1; ...    33   7.6  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 48.4 bits (110), Expect = 1e-04
 Identities = 20/22 (90%), Positives = 20/22 (90%)
 Frame = -1

Query: 628 FFLLGWVDELTAHLVLSGYWSP 563
           F LL WVDELTAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q2IHS3 Cluster: Putative uncharacterized protein
           precursor; n=1; Anaeromyxobacter dehalogenans 2CP-C|Rep:
           Putative uncharacterized protein precursor -
           Anaeromyxobacter dehalogenans (strain 2CP-C)
          Length = 506

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 7/77 (9%)
 Frame = -1

Query: 436 GGGTYPCGLR---RGPTTSNNANYNFGGLIFTTRCYSFTVEVNRDQWLST----YFIRKI 278
           GGGT P   +   +GP    NA Y+    I  T     + + N+++WL+T    Y +R  
Sbjct: 56  GGGTTPPRFQFGTQGPWAVENATYDASAGIQETPVIGLSTDENQNRWLATPSALYLLRPG 115

Query: 277 GTRLRDSNTGISLHTNA 227
            TR R  +    LH  A
Sbjct: 116 ETRFRRFDERDGLHMGA 132


>UniRef50_Q4L8V4 Cluster: Sensory transduction protein lytR; n=16;
           Staphylococcus|Rep: Sensory transduction protein lytR -
           Staphylococcus haemolyticus (strain JCSC1435)
          Length = 256

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
 Frame = -2

Query: 234 RMHQTSYPLGHVASLLKICGDTFKNI--ITLFFKLTV-YVNHGQNYKFQGT*SSKDRIQI 64
           R +QT+ PL +     K+  +TF  I   T+  K  +  V H  NY +Q T +S D+ Q+
Sbjct: 184 RTYQTNEPLNYYEK--KLSNNTFIKIHRATIINKTHIDSVEHWFNYTYQVTMTSGDKFQV 241

Query: 63  TRTFL 49
           +R+F+
Sbjct: 242 SRSFM 246


>UniRef50_UPI00006CA495 Cluster: RNA binding motif protein; n=1;
           Tetrahymena thermophila SB210|Rep: RNA binding motif
           protein - Tetrahymena thermophila SB210
          Length = 812

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 17/38 (44%), Positives = 20/38 (52%)
 Frame = +2

Query: 305 PLVTIDFHGEGITSCSKNQTPKIIICVITGGRTSSESA 418
           PL TID    G+ S S+ Q  KI IC I   +  SE A
Sbjct: 754 PLKTIDIQLNGLNSSSQKQKEKIYICSICKSKFESEKA 791


>UniRef50_A4RP26 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 400

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -2

Query: 564 HRHLQRKCATHLEI*VL--RSQYSYNGCPTLQTETHYCFTAEIGREAVPTRADSEEVLPP 391
           H H  R C+T + +      S +S +G PT+Q +T    T        P  AD ++  P 
Sbjct: 20  HHHGLRACSTCIRLTEAPDESAFSVHG-PTMQPQTASALTEIPTSTTKPAAADQQDKPPV 78

Query: 390 VITQIIILG 364
           VIT++ + G
Sbjct: 79  VITEMAVAG 87


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 694,720,030
Number of Sequences: 1657284
Number of extensions: 14750105
Number of successful extensions: 30949
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30052
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30942
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)