Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1085
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual           29   0.43 
SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces pomb...    26   5.2  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    26   5.2  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.9  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    25   9.1  

>SPBC25B2.10 |||Usp |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 307

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 19/52 (36%), Positives = 23/52 (44%)
 Frame = -2

Query: 246 YHYIRMHQTSYPLGHVASLLKICGDTFKNIITLFFKLTVYVNHGQNYKFQGT 91
           YH+ R H    P      L +I  DTF N     F LT+   H Q YK+  T
Sbjct: 88  YHHGRSHSLVSPPPSPHFLKRISFDTFNNKAATDFSLTLKTQH-QAYKWTRT 138


>SPCC1840.03 |sal3|pse1|karyopherin Sal3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1095

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 474 TETHYCFTAEIGREAVPTRADSEEVLPPVITQIIILGV*FLLHDVIPS 331
           TE   C+ AE+       +AD +  +  V+T +++ G+ F  HD + S
Sbjct: 684 TEMLVCYAAEL-------KADFDPYVNEVLTSVVLPGLKFFFHDGVRS 724


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +2

Query: 311 VTIDFHGEGITSCSKNQTPKI 373
           VT DF+G  + SCS +Q  K+
Sbjct: 20  VTYDFYGRRMVSCSADQRVKV 40


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -1

Query: 394  TSNNANYNFGGLIFTTRCYSFTVEVNRDQWLSTYFIRKIGTRLRDSN 254
            T   A++ FGG I++          + +Q L  + +RKI   L++ N
Sbjct: 1681 TDGLASWRFGGQIYSDYLDLLEGNFDANQELKLFTLRKISVALKELN 1727


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -1

Query: 310 QWLSTYFIRKIGTR 269
           +WL  YFIR +GTR
Sbjct: 187 RWLPKYFIRFVGTR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,366
Number of Sequences: 5004
Number of extensions: 60856
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)