Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1085
         (637 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0654 - 4900509-4900518,4900626-4900709,4900844-4901377,490...    28   5.4  
07_01_1058 - 9292890-9293655,9293831-9294600                           28   7.1  
01_06_1749 - 39636951-39638102                                         28   7.1  
07_03_1764 + 29322683-29323387,29323809-29323889,29323968-293240...    27   9.4  
01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664           27   9.4  

>07_01_0654 -
           4900509-4900518,4900626-4900709,4900844-4901377,
           4901462-4901619,4901703-4901832,4901918-4901999,
           4902097-4902230,4902314-4902410,4902512-4902788,
           4902881-4903024
          Length = 549

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 269 AGTNFSNEIRT*PLVTIDFHGEGITSC-SKNQTPKIIICVITGGRTSSESARVGTASLPI 445
           +GT+   +     L+ +D  G GIT+C  +N+  K    ++ G      + RV   +  +
Sbjct: 29  SGTSKRRDFTALELILVDEEGVGITACVGENEIQKFSTSIVEGHAYFLRNFRVSRQTKKL 88

Query: 446 SAV 454
           +AV
Sbjct: 89  NAV 91


>07_01_1058 - 9292890-9293655,9293831-9294600
          Length = 511

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 234 VCSDIPVFESRKRVPIFLMKYVLNHWSRLT 323
           +C   P+ +SR+   I L+ +V++HW   T
Sbjct: 386 ICGQRPIKQSREGHQILLVDWVIHHWKNGT 415


>01_06_1749 - 39636951-39638102
          Length = 383

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 506 SIVTTAAPPFKPKRITASRQK*AGRRY 426
           S+ + AAPPF P RIT+      GR +
Sbjct: 165 SVASAAAPPFDPSRITSYAAHPNGRAF 191


>07_03_1764 +
           29322683-29323387,29323809-29323889,29323968-29324072,
           29324453-29325382,29326728-29326856,29326953-29327042,
           29327237-29327293,29327362-29327394
          Length = 709

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = -1

Query: 487 PHPSNRNALLLHGRNRQGGGTYPCGLRRGPTTSNNANYNFGG 362
           PHP +R     +G  R+GGG+   GL  G  +     Y  GG
Sbjct: 102 PHPQDR-----YGSGRRGGGSGRGGLVDGDRSGGGDRYGAGG 138


>01_01_0800 - 6221306-6223016,6223418-6223443,6223653-6223664
          Length = 582

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/53 (35%), Positives = 25/53 (47%)
 Frame = -1

Query: 520 SSKVSV*LQRLPHPSNRNALLLHGRNRQGGGTYPCGLRRGPTTSNNANYNFGG 362
           S ++ + LQ LP P   +    HG    GGG    G  +    S  ANY+FGG
Sbjct: 388 SQELRLSLQSLPDPMFHHQQHRHG----GGGGGGNGTTQQALFSGAANYSFGG 436


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,738,665
Number of Sequences: 37544
Number of extensions: 414067
Number of successful extensions: 872
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)