Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1085
         (637 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical pr...    32   0.30 
U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav (...    29   2.8  
U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav (...    29   2.8  
DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.      29   2.8  
AF125443-2|AAD12800.1|  243|Caenorhabditis elegans Hypothetical ...    29   2.8  
Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical p...    28   6.4  

>Z70752-4|CAA94756.2|  363|Caenorhabditis elegans Hypothetical
           protein F25B3.4 protein.
          Length = 363

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
 Frame = -2

Query: 294 ISLEKLVPACGIRTLVYHYIRMHQTSYPLGHVASLLKICGD---TFKNIITLFFKLTVYV 124
           + L +L+P   + TL++H   +      L  V S + ICGD    F +++ LF K     
Sbjct: 73  MELTRLIPPEDVETLLFHAFSIFNKQPMLIEVNSPINICGDIHGQFSDLLRLFDKNG--F 130

Query: 123 NHGQNYKFQG 94
            H  NY F G
Sbjct: 131 PHRANYLFLG 140


>U23520-5|AAC46554.4|  975|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform a protein.
          Length = 975

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 352 TTRCYSFTVEVNRDQWLSTYFIRKIGTR----LRDSNTGISLHTNAPDVLSFGPCSVAFK 185
           T   + F  E  R+ W++   + K        LRD+N  ++ H+   DV +   C V  K
Sbjct: 542 TQLTFYFKNEATRNNWMTALLLSKSNVSPTDYLRDTNHKVAFHSFRVDVKNPATCDVCDK 601

Query: 184 NMR 176
            M+
Sbjct: 602 LMK 604


>U23520-4|ABB88236.1| 1007|Caenorhabditis elegans Mammalian vav
           (oncogene) relatedprotein 1, isoform b protein.
          Length = 1007

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 352 TTRCYSFTVEVNRDQWLSTYFIRKIGTR----LRDSNTGISLHTNAPDVLSFGPCSVAFK 185
           T   + F  E  R+ W++   + K        LRD+N  ++ H+   DV +   C V  K
Sbjct: 574 TQLTFYFKNEATRNNWMTALLLSKSNVSPTDYLRDTNHKVAFHSFRVDVKNPATCDVCDK 633

Query: 184 NMR 176
            M+
Sbjct: 634 LMK 636


>DQ136172-1|AAZ66767.1| 1007|Caenorhabditis elegans VAV-1 protein.
          Length = 1007

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
 Frame = -1

Query: 352 TTRCYSFTVEVNRDQWLSTYFIRKIGTR----LRDSNTGISLHTNAPDVLSFGPCSVAFK 185
           T   + F  E  R+ W++   + K        LRD+N  ++ H+   DV +   C V  K
Sbjct: 574 TQLTFYFKNEATRNNWMTALLLSKSNVSPTDYLRDTNHKVAFHSFRVDVKNPATCDVCDK 633

Query: 184 NMR 176
            M+
Sbjct: 634 LMK 636


>AF125443-2|AAD12800.1|  243|Caenorhabditis elegans Hypothetical
           protein H32C10.2 protein.
          Length = 243

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = +2

Query: 332 EGITSCSKNQTPKII-ICVITGGRTSSESARVGTASLPISAVK 457
           + +T  SKNQ+PK+  +   + G ++S    +GT S  IS +K
Sbjct: 65  KSVTGSSKNQSPKMAPVRSNSRGSSASSEEDIGTRSFSISVLK 107


>Z95559-15|CAB63361.1|  917|Caenorhabditis elegans Hypothetical
           protein Y41E3.11 protein.
          Length = 917

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -1

Query: 472 RNALLLHGRNRQGGGTYPCGLRRGPTTSNNANYNFGG 362
           R+ L++ GR R+GGG Y     RG       NY+ GG
Sbjct: 600 RSWLVIPGR-RRGGGGYNNHHNRGDRGGGGGNYHHGG 635


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,783,447
Number of Sequences: 27780
Number of extensions: 349374
Number of successful extensions: 716
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)