Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1085
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    27   0.12 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    27   0.12 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.7  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    22   5.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   5.7  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.6  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 496 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLRR--GPTTSNNANYNFG 365
           ++LP    ++ LL L+G NR+  G Y C +RR  G T   +A    G
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRRSEGDTAQASAELQLG 418


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 27.5 bits (58), Expect = 0.12
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -1

Query: 496 QRLPHPSNRNALL-LHGRNRQGGGTYPCGLRR--GPTTSNNANYNFG 365
           ++LP    ++ LL L+G NR+  G Y C +RR  G T   +A    G
Sbjct: 372 RQLPGTGRQSELLRLNGINREDRGMYQCIVRRSEGDTAQASAELQLG 418


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = +1

Query: 418 TGRYRLPAYFCREAVMRFGLKGGAAVVTILRP 513
           +G Y +PA+    +  R+ L   A V T + P
Sbjct: 438 SGEYEIPAHGLPPSATRYDLGAVATVGTTVAP 469


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 190 KRRYMAQRIRRLVHSYVVIYQCSN 261
           K+  M +RIR+    + VI+ CS+
Sbjct: 63  KKALMKERIRQKAAGHWVIHPCSS 86


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 190 KRRYMAQRIRRLVHSYVVIYQCSN 261
           K+  M +RIR+    + VI+ CS+
Sbjct: 63  KKALMKERIRQKAAGHWVIHPCSS 86


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +1

Query: 190 KRRYMAQRIRRLVHSYVVIYQCSN 261
           K+  M +RIR+    + VI+ CS+
Sbjct: 63  KKALMKERIRQKAAGHWVIHPCSS 86


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 634 FFFFLLGWVDELTAHLV 584
           FF FLL W    T  L+
Sbjct: 288 FFLFLLAWTPYATVALI 304


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -1

Query: 634 FFFFLLGWVDELTAHLV 584
           FF FLL W    T  L+
Sbjct: 288 FFLFLLAWTPYATVALI 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,672
Number of Sequences: 438
Number of extensions: 5150
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)