Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1085
         (637 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45640.1 68418.m05612 subtilase family protein contains Pfam ...    29   2.6  
At3g50220.1 68416.m05492 expressed protein contains Pfam profile...    29   2.6  
At1g08010.1 68414.m00874 zinc finger (GATA type) family protein ...    28   6.0  
At3g19553.1 68416.m02479 amino acid permease family protein weak...    27   7.9  

>At5g45640.1 68418.m05612 subtilase family protein contains Pfam
           domain, PF00082: Subtilase family; contains Pfam domain,
           PF02225: protease associated (PA) domain
          Length = 754

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 361 LIFTTRCYSFTVEVNRDQWLSTYFIRKIGTRLRDSNTGISL 239
           +IFTT+ Y FT E  RD++   +F    G  +  S+  +SL
Sbjct: 713 IIFTTQRYEFTGEARRDRYRFGWFSWTDGHHVVRSSIAVSL 753


>At3g50220.1 68416.m05492 expressed protein contains Pfam profile
           PF04669: Protein of unknown function (DUF579)
          Length = 322

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 350 SKNQT-PKIIICVITGGRTSSESARVGTASLPISAV 454
           SKN +    +  V+TGG T S S+ +  ++LP SA+
Sbjct: 54  SKNTSVAAAVAAVVTGGSTPSASSPISNSNLPTSAI 89


>At1g08010.1 68414.m00874 zinc finger (GATA type) family protein
           similar to PIR:T05288 from [Arabidopsis thaliana]
          Length = 303

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +1

Query: 13  NSPRKSPKGTPGK-ESPCYLYS 75
           + PRK  K TPGK ES CY  S
Sbjct: 168 SEPRKPEKSTPGKPESECYFSS 189


>At3g19553.1 68416.m02479 amino acid permease family protein weak
           similarity to aspartate/glutamate transporter 1 [Mus
           musculus] GI:21322754; contains Pfam profile PF00324:
           Amino acid permease
          Length = 479

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +3

Query: 288 MKYVLNHWSRLTSTVKE*HRVVKIKPPKL*FALLLVVGPLLSP 416
           M + LN+W + ++   E  R  K  P  L  A+LLV+G  L P
Sbjct: 209 MFWNLNYWDKASTLAGEVDRPGKTFPKALFGAVLLVMGSYLIP 251


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,896,705
Number of Sequences: 28952
Number of extensions: 328697
Number of successful extensions: 627
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)