Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1084
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125959-3|AAD14731.1|  531|Caenorhabditis elegans Udp-glucurono...    28   3.8  
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    27   6.6  
AC084197-4|AAO38575.1|  335|Caenorhabditis elegans Serpentine re...    27   8.7  

>AF125959-3|AAD14731.1|  531|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein14 protein.
          Length = 531

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 342 VRSVVYVILYVPCAILKFYSLKRIIIFHMVFLFKHYMF 455
           V+++VY +L+       F S K I+IF+ +F F H  F
Sbjct: 3   VKTLVYFLLFTG-----FISCKNILIFNPIFAFSHVKF 35


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -2

Query: 153 EHMKNFKISRTKKFMRPITKVSSSPQCIYVKL 58
           E + N  IS+TK   + +TKVS++ + +  KL
Sbjct: 579 EKISNITISKTKPLKKAVTKVSAAKKILNKKL 610


>AC084197-4|AAO38575.1|  335|Caenorhabditis elegans Serpentine
           receptor, class v protein27 protein.
          Length = 335

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 282 FVRLVHF*FQNETIKRTNAPVRSVVYVILYVPCAILKFYSLKRIII 419
           F+R  +F +Q   I    A   +++YV LY+ C  +   SL+R ++
Sbjct: 76  FIRQFYFDYQEYYIA---AATYNIIYVSLYIRCTGIILLSLQRYLV 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,930,675
Number of Sequences: 27780
Number of extensions: 195649
Number of successful extensions: 426
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 426
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)