Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1083
         (614 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A2E933 Cluster: AGC family protein kinase; n=1; Trichom...    36   0.58 
UniRef50_Q9YVV2 Cluster: Putative uncharacterized protein MSV140...    35   1.8  
UniRef50_A2DWW9 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_Q6FW76 Cluster: Pre-mRNA-splicing factor CLF1; n=1; Can...    33   7.1  

>UniRef50_A2E933 Cluster: AGC family protein kinase; n=1;
           Trichomonas vaginalis G3|Rep: AGC family protein kinase
           - Trichomonas vaginalis G3
          Length = 471

 Score = 36.3 bits (80), Expect = 0.58
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = -2

Query: 187 ISENIILIPNSSITHLFDVELTVFLNIYQKSISYTFYDYRRVRFAFLVMFI 35
           +SEN I IPNS  T + D+ + +FL  +     Y  Y+  RV F  L+ +I
Sbjct: 375 VSENRIAIPNSFNTKIIDIAI-LFLACFSNISKYPIYEIVRVIFLLLIFWI 424


>UniRef50_Q9YVV2 Cluster: Putative uncharacterized protein MSV140;
           n=1; Melanoplus sanguinipes entomopoxvirus|Rep: Putative
           uncharacterized protein MSV140 - Melanoplus sanguinipes
           entomopoxvirus (MsEPV)
          Length = 608

 Score = 34.7 bits (76), Expect = 1.8
 Identities = 35/134 (26%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
 Frame = -2

Query: 466 LKFDNHLFSQHQFYRVLGLKLALVTILLT*KCNRSYSVVKS---HE*FA*VLYHVKSFDL 296
           L FDN  +  +    ++     +++ L+    N +YS +K+   +E    ++Y   SFD 
Sbjct: 211 LYFDNIEYYTYNIKNLMNNNTNILSYLINIPSNINYSEIKNIIENEYNVDIIYQNASFDE 270

Query: 295 VDLQNHIIRNNFKNIM*YTHR-LYCLLKRSRNSDYIVISENIILIPNSSITHLFDVELTV 119
             L+ HII+N F NI       LY    R  N + I++ +NI       I+ + +    +
Sbjct: 271 NYLKLHIIKNEFLNITNIIDTDLYFESNRLYNLNRILL-DNIKDFEIDIISEIGNYNNDI 329

Query: 118 FLNIYQKSISYTFY 77
             ++Y K + Y FY
Sbjct: 330 LNSLYIKGL-YRFY 342


>UniRef50_A2DWW9 Cluster: Putative uncharacterized protein; n=1;
            Trichomonas vaginalis G3|Rep: Putative uncharacterized
            protein - Trichomonas vaginalis G3
          Length = 1555

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = -2

Query: 325  VLYHVKSFDLVDLQNHIIRNNFKNIM*YTHRLYCLLKRSRNSDYI-VISENIILIPNSSI 149
            V  + K  D    Q  +I   F NI+   +R   + + S  S ++ V     + + N  I
Sbjct: 1137 VWLYCKVVDCFPDQYQMISTLFSNILPMINRKMYITRNSILSFFVHVFYSEYLRVKN--I 1194

Query: 148  THLFDVELTVFLNIYQKSISYTFYDYRRVRFAFLVMF 38
              +FD+ ++ FL    KS+ + +Y++  V   FL  F
Sbjct: 1195 DKIFDIFMSEFLFNAYKSLEFVYYEFLTVLTLFLTSF 1231


>UniRef50_Q6FW76 Cluster: Pre-mRNA-splicing factor CLF1; n=1;
           Candida glabrata|Rep: Pre-mRNA-splicing factor CLF1 -
           Candida glabrata (Yeast) (Torulopsis glabrata)
          Length = 695

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 19/63 (30%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
 Frame = +3

Query: 81  KVYEIDFWYMLRKTVNSTSNRCVIEEFGIKIIFSDITM*SLLRDRFNKQYNR-WVYYMMF 257
           KVY+ D W +  + + +   + V+E F   ++ + I   S  +D++ KQY   W+ Y+ F
Sbjct: 312 KVYDYDTWLLYLQLLENNYPKLVMEAFS-NVLNAAIPT-SRTKDKYWKQYILIWIKYLTF 369

Query: 258 LKL 266
           L+L
Sbjct: 370 LEL 372


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 494,271,023
Number of Sequences: 1657284
Number of extensions: 8664867
Number of successful extensions: 18432
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18431
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)