Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1083
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   2.8  
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo...    25   8.7  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.7  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 24/94 (25%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = -2

Query: 325 VLYHVKSFDLVDLQNHIIRNNFKNIM*-YTHRLYCLLKRSRNSDYIVISENIILIPNSSI 149
           +LY  K F+L+  ++      F ++M  +   L CL  +S N DY+++  N  +I   S 
Sbjct: 161 LLYRQKKFNLLREESE----GFSHLMINFFDALTCLRNKSLNEDYLIVQVNKSII---ST 213

Query: 148 THLFDVELTVFLNIYQKSISYTFYDYRRVRFAFL 47
              FD++    L++     S    D  R   + L
Sbjct: 214 IGAFDLDPNKVLDLILLLFSENLLDSWRFFLSIL 247


>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 400

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/23 (43%), Positives = 19/23 (82%)
 Frame = -2

Query: 271 RNNFKNIM*YTHRLYCLLKRSRN 203
           R++FK ++ +T++LY  +KRS+N
Sbjct: 95  RHDFKELVLHTNQLYEPVKRSQN 117


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -2

Query: 190 VISENIILIPNSSITHLFDVELTVFLNIYQKSISYTFYDYRRVRFAFLVMFIY 32
           ++++ +I    SS  H+  V+L V L +++    Y+F DY     A  ++ ++
Sbjct: 596 LLTDKLISYCYSSALHI--VDLLVLLRMHKFLSVYSFMDYHSCHAASFIILVH 646


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,201
Number of Sequences: 5004
Number of extensions: 42068
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)