Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1083
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical p...    27   8.1  

>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 226 CLLKRSRNSDYI-VISENIILIPNSSITHLFDVELTVFLNIYQKSISYTFYDYRRVRFAF 50
           CLLK   ++ +I  +  + ILIPN++ ++  + E     + +  ++ Y  YDY+ ++ + 
Sbjct: 248 CLLKYKESASFIGSLDMDDILIPNNANSYYEEFEREYAGSQFISALHYDKYDYKTIKVSE 307

Query: 49  L 47
           L
Sbjct: 308 L 308


>Z73425-4|CAA97786.1|  667|Caenorhabditis elegans Hypothetical
           protein F12F6.8 protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 15/58 (25%), Positives = 29/58 (50%)
 Frame = -2

Query: 232 LYCLLKRSRNSDYIVISENIILIPNSSITHLFDVELTVFLNIYQKSISYTFYDYRRVR 59
           +YC L++ R+S YI+  +       +S TH    ++ +   I +   +YT  D++  R
Sbjct: 37  IYCHLRKMRSSSYILSKDR--TRNETSWTHRATEQIRLKFQISKIDFTYTLLDFKTFR 92


>Z81536-11|CAB04363.2|  295|Caenorhabditis elegans Hypothetical
           protein F40D4.7 protein.
          Length = 295

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = -2

Query: 235 RLYCLLKRSRNSDYIV--ISENIILIPNSSITHLFDVELTVFLNIYQKS 95
           +L C   +++N+D  +  ++ N + + +  I   FDV L++FL ++ ++
Sbjct: 195 KLICKANKTKNNDATMNRVAANRLALIDVIIIFFFDVLLSIFLTVFDQN 243


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,914,079
Number of Sequences: 27780
Number of extensions: 225368
Number of successful extensions: 499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 499
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)