Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1082
(527 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo... 33 0.026
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 29 0.32
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 29 0.57
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.57
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo... 28 0.99
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 1.7
SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces po... 27 2.3
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 27 2.3
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3... 27 2.3
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 26 3.0
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 25 5.3
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 25 7.0
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|... 25 7.0
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 25 7.0
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 7.0
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 25 7.0
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote... 25 9.2
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 25 9.2
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi... 25 9.2
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo... 25 9.2
>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
Aah4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 774
Score = 33.1 bits (72), Expect = 0.026
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 3/77 (3%)
Frame = +3
Query: 228 PVVHAAPVEHSSYIHASP---VVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEF 398
P H H ++ P P +H HH P V H+ DH P K+E
Sbjct: 363 PWKHEEHCHHGKFLRPVPHNVTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEE 422
Query: 399 SYSVEDPHTGDHKSNTK 449
S + H+ + + K
Sbjct: 423 HCSCHEDHSVHERPSAK 439
Score = 28.3 bits (60), Expect = 0.75
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 300 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 395
P +H HH P V H+ DH P K+E
Sbjct: 195 PWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHE 226
Score = 28.3 bits (60), Expect = 0.75
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +3
Query: 300 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 395
P +H HH P V H+ DH P K+E
Sbjct: 307 PWKHEEHCHHGRFPRPVPHNGTKPDHKPWKHE 338
Score = 27.9 bits (59), Expect = 0.99
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = +3
Query: 300 PVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYE 395
P +H HH P + H+ DH P K+E
Sbjct: 280 PWKHEEHCHHGKFPRPIPHNGTKPDHKPWKHE 311
Score = 25.0 bits (52), Expect = 7.0
Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 11/72 (15%)
Frame = +3
Query: 213 IQHAGPVVHAAPVEHSSYIHAS----PVVQHFSPVQHAP-------VVHHAAIPIAVEHS 359
+ H G P +H + H PV + + H P HH P V H+
Sbjct: 184 VPHNGTKPDHKPWKHEEHCHHGKFPRPVPHNGTKPDHKPWKHEEHCSCHHDKFPRPVPHN 243
Query: 360 DHVEDHAPAKYE 395
DH P K+E
Sbjct: 244 GTKPDHKPWKHE 255
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 324 HHAAIPIAVEHSDHVEDHAPAKYE 395
HH P V H+ DH P K+E
Sbjct: 176 HHDKFPRPVPHNGTKPDHKPWKHE 199
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +3
Query: 324 HHAAIPIAVEHSDHVEDHAPAKYE 395
HH P V H+ DH P K+E
Sbjct: 261 HHDKFPRPVPHNGTKPDHKPWKHE 284
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 29.5 bits (63), Expect = 0.32
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 135 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPV 251
P Q T+ +P SHAAP+ + P H+ P + A PV
Sbjct: 63 PRKQTTS--SPSFSHAAPLHPLSPPSFTHSQPQIQAQPV 99
>SPBC1773.09c |mug184||meiotically upregulated gene
Mug184|Schizosaccharomyces pombe|chr 2|||Manual
Length = 551
Score = 28.7 bits (61), Expect = 0.57
Identities = 13/29 (44%), Positives = 20/29 (68%)
Frame = +3
Query: 369 EDHAPAKYEFSYSVEDPHTGDHKSNTKPV 455
E+ +P Y FS+ +ED +T KS++KPV
Sbjct: 298 EESSP--YSFSFKLEDSNTPKFKSSSKPV 324
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 28.7 bits (61), Expect = 0.57
Identities = 22/81 (27%), Positives = 34/81 (41%)
Frame = -3
Query: 417 DPRRNMRTHTSREHGLRHDRNVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRR 238
D R++ HT RE + N RR+ ESQ+ R ++ + T NV R R
Sbjct: 1440 DNLRSVSRHTRREPQQAQNLNARREHESQKSDRWRQNGNVNRNPRVSNNNST-NVSRERS 1498
Query: 237 EQQDRHVESKGLRESVQEQHD 175
+ + + R+ V E D
Sbjct: 1499 SEANHRTSNDNKRDEVTEGKD 1519
>SPBC800.09 |sum2||G2/M transition checkpoint protein
Sum2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 27.9 bits (59), Expect = 0.99
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +3
Query: 135 PSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHA 314
PS+Q ++ P + P A+P +Q P P S I AS + + + ++++
Sbjct: 206 PSNQKPPNFAPGMPAPGPTAVSASPSLQSMPPTNGVIPGAQPS-IEAS-IEKESTSIRNS 263
Query: 315 PVVHHAAI--PIAVEHSDHVEDHAPAK 389
V + + + V S VE P+K
Sbjct: 264 TVTNDRVVNTTVDVSQSQTVETSGPSK 290
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 1.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = -1
Query: 323 HDWSMLHRAEVLDYWRSMYI 264
+D+S + E +DYW+S+YI
Sbjct: 549 NDYSPMLSYEAIDYWKSLYI 568
>SPCC16A11.04 |snx12||sorting nexin Snx12 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1010
Score = 26.6 bits (56), Expect = 2.3
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 258 SSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDP 419
S Y+H VV+ Q P+ H P + SDH + A K F SV++P
Sbjct: 414 SRYLHFWLVVEGLKESQDDPLNAHMIAPFSDIVSDHTDFTAIVKSYFE-SVDNP 466
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 2.3
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 153 AHYTPVLSHAAPVLTHAAPL 212
A +TPVL H + +L H +PL
Sbjct: 538 AEHTPVLKHTSSLLDHHSPL 557
>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 2.3
Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Frame = +3
Query: 117 IVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAG-PV---VHAAPVEHSSYIHASPV 284
I H +PS + + H P T +AP G PV H A + A P
Sbjct: 270 IYEHSKPSETVKSEQETAVEHPKPTATTSAPSASPTGVPVEEESHKATSDAVPPAEAKPE 329
Query: 285 VQHFSPVQHAPVVHHAAIP 341
S + AP +P
Sbjct: 330 PVPASAAERAPTSESTTVP 348
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 3.0
Identities = 11/36 (30%), Positives = 19/36 (52%)
Frame = +1
Query: 337 FQLPSNIPIMSKTMLPRSMSSHIPSRIPTPAITSPT 444
F + +++P +SKT+ R S H+ P + PT
Sbjct: 91 FNVSNHVPSISKTVNIRETSKHLKHSTKAPKCSLPT 126
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 25.4 bits (53), Expect = 5.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 346 PSNIPIMSKTMLPRSMSSHIPSRIPTPAITS 438
PS IP T +P S P+RIPTP +S
Sbjct: 585 PSVIPPRVPTPVPGRTLSPKPTRIPTPIPSS 615
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 25.0 bits (52), Expect = 7.0
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -1
Query: 341 WNRSVVHDWSMLHRAEVLDYW 279
WN + D+ +L+R+ +D W
Sbjct: 230 WNHAYYKDYGLLNRSRYIDTW 250
>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 572
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -1
Query: 506 WNHQAGVESIRLSRHHHHGFRVG 438
W++ A VE+ H GFRVG
Sbjct: 497 WDYAAIVEAFNAGEGHAKGFRVG 519
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.0 bits (52), Expect = 7.0
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = -1
Query: 527 LCIRPCGWNHQAGVESIRLSRHH 459
LC C W+ A V SI R H
Sbjct: 59 LCCSQCDWHEPANVYSIEQRRSH 81
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 25.0 bits (52), Expect = 7.0
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +3
Query: 21 MFFKIAVVCSILAICQGGVIDEGHGHAVSSQSIVRHDEPSHQATAH 158
+ F +A++CS+L GGV+ GH ++ VR PS++A +
Sbjct: 92 LIFIVALICSVLIGVLGGVL--GH------RTAVRDRHPSYKAKTY 129
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 25.0 bits (52), Expect = 7.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 312 APVVHHAAIPIAVEHSDHVED 374
+P + + IP++ EHSD VE+
Sbjct: 201 SPEIAKSGIPLSSEHSDDVEE 221
>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
L37a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 94
Score = 24.6 bits (51), Expect = 9.2
Identities = 10/31 (32%), Positives = 13/31 (41%)
Frame = -2
Query: 385 AGAWSST*SECSTAIGIAAWCTTGACCTGLK 293
AG W + CS + AW T A T +
Sbjct: 52 AGIWKCSGKGCSKTLAGGAWTVTTAAATSAR 82
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 197 SQYRSSMTQYWGIMCRCLMRRLVMADYALGRHSMAVALVYN 75
S + + + Q W + + L M Y + RH +A+ YN
Sbjct: 166 SLHYAVLAQIWNLADSAHVGYLEMYQYVIARHLVAICKQYN 206
>SPAC688.06c |slx4||structure-specific endonuclease subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 9.2
Identities = 11/22 (50%), Positives = 12/22 (54%)
Frame = +2
Query: 140 SSSNGTLYPSIESCCSCTDSRS 205
S S TL +ESC DSRS
Sbjct: 304 SDSKATLIKIVESCLDAIDSRS 325
>SPBC23E6.05 |arx1||ribosomal export complex Arx1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 417
Score = 24.6 bits (51), Expect = 9.2
Identities = 8/30 (26%), Positives = 16/30 (53%)
Frame = -1
Query: 527 LCIRPCGWNHQAGVESIRLSRHHHHGFRVG 438
+C+ C +N+ G ES+ + + +VG
Sbjct: 79 ICVNNCAYNYAPGPESVIAGNDNSYHLQVG 108
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,511
Number of Sequences: 5004
Number of extensions: 56311
Number of successful extensions: 227
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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