Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1082
(527 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 38 0.004
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 36 0.024
U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interactin... 34 0.072
AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical ... 33 0.13
AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protei... 33 0.13
Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical pr... 32 0.29
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 31 0.51
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 31 0.51
AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical ... 31 0.51
Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical pr... 30 1.2
Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical pr... 30 1.2
AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-depend... 30 1.2
Z77667-2|CAB01234.1| 211|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical pr... 29 2.1
U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative transc... 29 2.7
U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain fami... 29 2.7
Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical pr... 28 4.8
AC024751-5|AAK21514.2| 220|Caenorhabditis elegans Hypothetical ... 28 4.8
Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical pr... 27 6.3
Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical p... 27 6.3
Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical p... 27 8.3
Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical pr... 27 8.3
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 37.9 bits (84), Expect = 0.004
Identities = 32/123 (26%), Positives = 38/123 (30%)
Frame = +3
Query: 84 EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSS 263
E HGH S + H H A AH+ H H AP H H H
Sbjct: 443 ESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEH------HHAPA-HHGHHGEHGTHHGHHG 495
Query: 264 YIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSN 443
H+ H HAP H H H E H + + H G H S+
Sbjct: 496 SHHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSH 555
Query: 444 TKP 452
P
Sbjct: 556 HSP 558
Score = 30.3 bits (65), Expect = 0.89
Identities = 25/101 (24%), Positives = 33/101 (32%)
Frame = +3
Query: 90 HGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYI 269
HGH H + H+ SH +P H H P H EH ++
Sbjct: 468 HGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPA-HHGHHGEHHHAPAHHGHHGEHGTH- 525
Query: 270 HASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKY 392
H H +P H HH H H H+PA +
Sbjct: 526 HGHHGEHHHAPAHHG---HHGEH--GTHHGHHGSHHSPAHH 561
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 35.5 bits (78), Expect = 0.024
Identities = 29/86 (33%), Positives = 35/86 (40%), Gaps = 5/86 (5%)
Frame = +3
Query: 99 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVL---THAAPLIQHAGPVVHAAPVEHSSYI 269
A + Q V P Q PV A P A P++Q A PV A+P + +
Sbjct: 179 APTQQPPVVQQTPPPQQPVVQAPVAQQAPPSQPQQAQAQPVVQQAPPVQQASPKPVAQPV 238
Query: 270 HASPVVQHFSP--VQHAPVVHHAAIP 341
PVVQ VQ APVV A P
Sbjct: 239 QQQPVVQAPPKPIVQQAPVVQQAPPP 264
Score = 34.3 bits (75), Expect = 0.055
Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +3
Query: 108 SQSIVRHDEPSHQATAHYTPVLSHAAPVL-THAAPLIQHAGPVVHAAPVEHSSYIHASPV 284
+Q +V+ P QA+ PV+ P++Q A PVV AP A PV
Sbjct: 216 AQPVVQQAPPVQQASPKPVAQPVQQQPVVQAPPKPIVQQA-PVVQQAPPPKQQQAQAQPV 274
Query: 285 VQHFSPVQHAPVVHHAAIPI 344
Q P APVV A+ P+
Sbjct: 275 QQ---PPNPAPVVQQASAPV 291
Score = 27.1 bits (57), Expect = 8.3
Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Frame = +3
Query: 135 PSHQATAHYTPVLSHAAPVLTHAA-PLIQHA-GPVVHAAPVEHSSYIHASPVVQHFSPVQ 308
P+ A A P A PV + P +Q A PVV AP P Q PV+
Sbjct: 319 PTRAAPAPPKPAPQQAPPVQQNPPKPAVQQAQAPVVQQAPAPPVQQAPPKPTPQQAPPVR 378
Query: 309 HAP 317
P
Sbjct: 379 QNP 381
>U42841-12|AAC48169.2| 1030|Caenorhabditis elegans Gex interacting
protein protein16, isoform d protein.
Length = 1030
Score = 33.9 bits (74), Expect = 0.072
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 249 VEHSSYIHASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPA 386
VE SSYIH+S +QH H P + ++H H P+
Sbjct: 87 VESSSYIHSSQQIQHPPQQHHPPPPSPPPVAETIQHQPHPSQQQPS 132
>AF067222-1|AAC17017.2| 1464|Caenorhabditis elegans Hypothetical
protein H11E01.3 protein.
Length = 1464
Score = 33.1 bits (72), Expect = 0.13
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 9/107 (8%)
Frame = +3
Query: 84 EGHGHAVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVH--AAPVE- 254
E G S S + H A +PV + + HA+ +H V H AA E
Sbjct: 692 EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEHFEHREVVPHSPAASQEE 751
Query: 255 --HSSYIHASPVVQHF---SPVQHAPVV-HHAAIPIAVEHSDHVEDH 377
S +H+ V +HF QH+PV A HS H +H
Sbjct: 752 FGRSPSVHSPHVSEHFEHHEEAQHSPVASQEEAARSPSVHSSHASEH 798
Score = 29.9 bits (64), Expect = 1.2
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 1/112 (0%)
Frame = +3
Query: 102 VSSQSIVRHDEP-SHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHAS 278
V S++ H E S A+ H L + + + PV + P S + +S
Sbjct: 627 VQSENFEHHAEVHSFHASEHIDEALPSPVQSVHSSHDHHDRSSPVA-SEPAARSPSVQSS 685
Query: 279 PVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDH 434
+HF +H V + S+H+E+ + SV PH +H
Sbjct: 686 RTSEHF---EHRGEVPQSPSSNQFHSSEHIEEARQSPVTNQESVHSPHASEH 734
Score = 29.1 bits (62), Expect = 2.1
Identities = 29/111 (26%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Frame = +3
Query: 120 VRHDEPSHQATAHYTPVLS-HAAPVLTHAAPLIQHAGPVVHAAPV-EH-SSYIHASPVVQ 290
V D +H +PV S H++ H Q P VH++ EH SPV
Sbjct: 556 VHTDHKAHSEDVPQSPVQSVHSSHASEHIDEAPQSPVPSVHSSHASEHIEQEALPSPVAS 615
Query: 291 HFS-PVQHAPVV------HHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPH 422
P +P+V HHA + + S+H+++ P+ + +S D H
Sbjct: 616 ERDVPSAESPLVQSENFEHHAEVH-SFHASEHIDEALPSPVQSVHSSHDHH 665
>AF017746-1|AAD01632.1| 1198|Caenorhabditis elegans ladder protein
protein.
Length = 1198
Score = 33.1 bits (72), Expect = 0.13
Identities = 18/71 (25%), Positives = 37/71 (52%)
Frame = -3
Query: 393 HTSREHGLRHDRNVRRQLESQRGARLEHVAQG*SVGLLAKHVYTKNVPRGRREQQDRHVE 214
H+S+ R D ++ L +++ L+ +AQG V+ +P G+REQ+D+ +
Sbjct: 27 HSSKSFRNRRDNDLLDWLTAEQKVSLKDIAQGTEEFKKKVAVFYNELPSGKREQRDKFYK 86
Query: 213 SKGLRESVQEQ 181
+ L+ + + Q
Sbjct: 87 THCLQWTAKAQ 97
>Z66512-5|CAA91327.2| 1245|Caenorhabditis elegans Hypothetical
protein F52H3.7a protein.
Length = 1245
Score = 31.9 bits (69), Expect = 0.29
Identities = 35/125 (28%), Positives = 47/125 (37%), Gaps = 3/125 (2%)
Frame = +3
Query: 102 VSSQSI-VRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHS--SYIH 272
VS++S H P+ A A AAP ++ VH AP E + S
Sbjct: 562 VSTESTPAEHSAPAESAPALAEEHKDEAAPSEPVQDVPVEEVIEAVHIAPAESAPASVEE 621
Query: 273 ASPVVQHFSPVQHAPVVHHAAIPIAVEHSDHVEDHAPAKYEFSYSVEDPHTGDHKSNTKP 452
A+P S APV H A + S H E A + + SVE +HK P
Sbjct: 622 AAP-----SESTQAPVEEHKDATTAAD-SSHEEPKAESDAPAAESVETAPVEEHKDEASP 675
Query: 453 VMVMS 467
+ S
Sbjct: 676 TALES 680
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of glp-1
protein.
Length = 1492
Score = 31.1 bits (67), Expect = 0.51
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 99 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPVVHAAPVEHSSYIH 272
A +Q + + SH T P S+ AP A + QH+ G + A P S + H
Sbjct: 1212 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1271
Query: 273 ASPVVQHFSPVQHAPVVHHA 332
+ F+P AP HA
Sbjct: 1272 IAAPQARFTPTPGAPSPWHA 1291
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 31.1 bits (67), Expect = 0.51
Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 2/80 (2%)
Frame = +3
Query: 99 AVSSQSIVRHDEPSHQATAHYTPVLSHAAPVLTHAAPLIQHA--GPVVHAAPVEHSSYIH 272
A +Q + + SH T P S+ AP A + QH+ G + A P S + H
Sbjct: 1232 APGAQFGAKPEASSHAPTPPPQPHPSYQAPAPPPALSVFQHSPQGAPITAPPPASSHHEH 1291
Query: 273 ASPVVQHFSPVQHAPVVHHA 332
+ F+P AP HA
Sbjct: 1292 IAAPQARFTPTPGAPSPWHA 1311
>AF106579-5|AAC78198.1| 174|Caenorhabditis elegans Hypothetical
protein F54E2.2 protein.
Length = 174
Score = 31.1 bits (67), Expect = 0.51
Identities = 13/26 (50%), Positives = 14/26 (53%)
Frame = -2
Query: 331 AWCTTGACCTGLKCWTTGEACIYEEC 254
+WCTT C G KC TG C Y C
Sbjct: 150 SWCTTDQDCKGKKCCPTG--CDYNVC 173
>Z99773-4|CAB16925.1| 342|Caenorhabditis elegans Hypothetical
protein F18H3.5a protein.
Length = 342
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 273 HVYTKNVPRGRREQQDRHVESKGLR 199
H + +N+PRG EQQ +HV ++ +R
Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155
>Z99773-1|CAB16923.2| 406|Caenorhabditis elegans Hypothetical
protein F18H3.5b protein.
Length = 406
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 273 HVYTKNVPRGRREQQDRHVESKGLR 199
H + +N+PRG EQQ +HV ++ +R
Sbjct: 195 HTFLRNIPRGVPEQQAKHVTAQIVR 219
>Z50110-5|CAA90447.1| 342|Caenorhabditis elegans Hypothetical
protein F18H3.5a protein.
Length = 342
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 273 HVYTKNVPRGRREQQDRHVESKGLR 199
H + +N+PRG EQQ +HV ++ +R
Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155
>AF083878-1|AAD48898.1| 342|Caenorhabditis elegans cyclin-dependent
kinase CDK-4 protein.
Length = 342
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 273 HVYTKNVPRGRREQQDRHVESKGLR 199
H + +N+PRG EQQ +HV ++ +R
Sbjct: 131 HTFLRNIPRGVPEQQAKHVTAQIVR 155
>Z77667-2|CAB01234.1| 211|Caenorhabditis elegans Hypothetical
protein M04B2.3 protein.
Length = 211
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = -3
Query: 276 KHVYTKNVPRGRREQQDRHVESKGLRESVQEQHDSILGYNVPLLDEK 136
+ V T+ G Q++ E + LRES+++ H I+ YN L +++
Sbjct: 165 EQVKTRTRELGEVAQKEIAAEIEDLRESLKDAHKMIVKYNTELAEQE 211
>Z74042-9|CAA98526.1| 325|Caenorhabditis elegans Hypothetical
protein T11F9.10 protein.
Length = 325
Score = 29.1 bits (62), Expect = 2.1
Identities = 18/54 (33%), Positives = 23/54 (42%)
Frame = +2
Query: 302 CATCSSRAPRCDSNCRRTFRSCRRPCSREV*VLIFRRGSPHRRSQVQHETRDGD 463
CATC+S PRC R R C R + VL+ S + + E D D
Sbjct: 32 CATCTSNRPRCTP--PRRIRQCGPKFRRRLVVLLGNSPSKTQENDALIEEDDDD 83
>U72348-1|AAB17273.1| 355|Caenorhabditis elegans putative
transcription factor LIM-4 protein.
Length = 355
Score = 28.7 bits (61), Expect = 2.7
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 3/123 (2%)
Frame = +2
Query: 5 SKASQHVLQNCCSLLDFGYLPRWCYRRGPRPC---CVFPKHSPP*RAFSSSNGTLYPSIE 175
S S + + L D+ + P R P C +H + F S +G Y E
Sbjct: 63 SDESSVYISSALRLADYAFTPDDNIRIKPDAVIVICTQCQHQIQDKFFLSIDGRNYH--E 120
Query: 176 SCCSCTDSRSPFDXXXXXXXXXXPRGTFFVYTCFASSPTLQPCATCSSRAPRCDSNCRRT 355
+C C+ +P TF+ C+ + ++C P+C ++C RT
Sbjct: 121 NCLQCSTCENPLSNKCFYKDK-----TFYCKGCYFRTHVTSTASSCRELGPKC-ASCDRT 174
Query: 356 FRS 364
++
Sbjct: 175 IQA 177
>U39740-5|AAA80428.2| 355|Caenorhabditis elegans Lim domain family
protein 4 protein.
Length = 355
Score = 28.7 bits (61), Expect = 2.7
Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 3/123 (2%)
Frame = +2
Query: 5 SKASQHVLQNCCSLLDFGYLPRWCYRRGPRPC---CVFPKHSPP*RAFSSSNGTLYPSIE 175
S S + + L D+ + P R P C +H + F S +G Y E
Sbjct: 63 SDESSVYISSALRLADYAFTPDDNIRIKPDAVIVICTQCQHQIQDKFFLSIDGRNYH--E 120
Query: 176 SCCSCTDSRSPFDXXXXXXXXXXPRGTFFVYTCFASSPTLQPCATCSSRAPRCDSNCRRT 355
+C C+ +P TF+ C+ + ++C P+C ++C RT
Sbjct: 121 NCLQCSTCENPLSNKCFYKDK-----TFYCKGCYFRTHVTSTASSCRELGPKC-ASCDRT 174
Query: 356 FRS 364
++
Sbjct: 175 IQA 177
>Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical
protein T06E4.9 protein.
Length = 212
Score = 27.9 bits (59), Expect = 4.8
Identities = 20/60 (33%), Positives = 27/60 (45%)
Frame = +3
Query: 165 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 344
P + APVL APL+ P V AAP + +PV +PV P +A P+
Sbjct: 101 PFFASPAPVLAAPAPLLAPPAP-VFAAPRPVFAAPALAPVAP-MAPVLRGPAFAYAPSPV 158
>Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical
protein C18D1.1 protein.
Length = 645
Score = 27.9 bits (59), Expect = 4.8
Identities = 27/121 (22%), Positives = 45/121 (37%), Gaps = 3/121 (2%)
Frame = -3
Query: 519 STLRMEPSGWSREYSPFTTSPSRVSCWTCDRRCGDPRRNMRTHTSREH-GLRHDRNVRRQ 343
S++ P+G + P + S S C CD+R M H +++H G Q
Sbjct: 401 SSVPTTPNGANNNSGPNSASMSEEKCALCDKRVSPSM--MMLHMAQDHFGAAAANGDLNQ 458
Query: 342 LESQRGARLEHVAQG*SVGLL--AKHVYTKNVPRGRREQQDRHVESKGLRESVQEQHDSI 169
+ + G R + + S LL Y P+ +RH++ + E D
Sbjct: 459 MMAILGQRNQSTEEKMSSNLLECTDCSYKTRDPKNLDLHMERHIKMSEAKGRGDEDEDVA 518
Query: 168 L 166
L
Sbjct: 519 L 519
>AC024751-5|AAK21514.2| 220|Caenorhabditis elegans Hypothetical
protein Y18H1A.4 protein.
Length = 220
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 369 EDHAPAKYEFSYSVEDPHTGDHKSNTKP 452
E+ AP KY +YS + H D K N +P
Sbjct: 193 EETAPGKYRHNYSSDSSHLSD-KKNLRP 219
>Z81568-3|CAB04592.1| 643|Caenorhabditis elegans Hypothetical
protein K08E3.4 protein.
Length = 643
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 132 EPSHQATAHYTPVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSP 302
+P+ A+ P A P P+I P AP ++S A PV + F P
Sbjct: 455 KPAVSYDAYEEPPAEPAPPTFLAPTPVIAPPPPEPTPAPSHYASQYDAPPVHESFEP 511
>Z70756-12|CAA94796.2| 180|Caenorhabditis elegans Hypothetical
protein T06E4.10 protein.
Length = 180
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/62 (35%), Positives = 31/62 (50%)
Frame = +3
Query: 165 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 344
PV++ AAP A A P++ AAP ++ I+ PV +P AP AA+P
Sbjct: 100 PVVA-AAPAFAPAYAPAPVASPMIAAAPALAAASINGLPVAA--APA-FAPAFAPAAVPA 155
Query: 345 AV 350
AV
Sbjct: 156 AV 157
>Z70756-10|CAI46587.1| 228|Caenorhabditis elegans Hypothetical
protein T06E4.12 protein.
Length = 228
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +3
Query: 168 VLSHAAPVLTHAAPLIQHAGPVVHAAP 248
VL+ AP+L APL+ PV+ AAP
Sbjct: 62 VLAAPAPLLAPPAPLLAPPAPVLAAAP 88
Score = 27.1 bits (57), Expect = 8.3
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 165 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSP---VQHAPVVHHAA 335
P + AP+++ AP A P AP+ + A+P + F+P + PV+ A
Sbjct: 114 PPVPPVAPIVSAFAPRPVLAAPAFAPAPILAPRPVLAAPAIPAFAPAPLLAPRPVLAAPA 173
Query: 336 IP 341
IP
Sbjct: 174 IP 175
>Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical
protein T06E4.8 protein.
Length = 199
Score = 27.1 bits (57), Expect = 8.3
Identities = 19/60 (31%), Positives = 27/60 (45%)
Frame = +3
Query: 165 PVLSHAAPVLTHAAPLIQHAGPVVHAAPVEHSSYIHASPVVQHFSPVQHAPVVHHAAIPI 344
P + APVL APL+ P V AAP + +PV +P+ P +A P+
Sbjct: 88 PFFTPPAPVLAAPAPLLAPPAP-VFAAPRPVFASPALAPVAP-MAPILRGPAFAYAPSPV 145
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,092,109
Number of Sequences: 27780
Number of extensions: 340985
Number of successful extensions: 1345
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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