Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1079
         (741 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    28   1.2  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    28   1.2  
SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1 |Sc...    26   4.9  
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po...    26   6.5  

>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 507 FENDFSEIQASVKCLVLYDSYRLR 578
           FE D + +QA V C V++DS R+R
Sbjct: 283 FEPDLNALQALVLCQVVFDSDRIR 306


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -2

Query: 149 TTTTHETIKALLLHFETCNFSTTPALVMLYKNCCFAFLPSRE 24
           T +TH  +K LL   ++C FS  P+ ++      +   PS +
Sbjct: 252 TPSTHSDLKELLESIKSCFFSLLPSTIIAGARAFYYLAPSNQ 293


>SPBC31E1.02c |pmr1||P-type ATPase, calcium transporting Pmr1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 899

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 15/40 (37%), Positives = 28/40 (70%)
 Frame = +3

Query: 618 ATAISYTVGGFLILALSMSMGGLLVITGIFVKEYMLYESL 737
           ++AIS T+G  +  A+S+++  ++V+T  FV+EY   +SL
Sbjct: 71  SSAISVTLGN-IDDAISIALAIVIVVTVGFVQEYRSEQSL 109


>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 629 YSRRNHAFLLRESNYIGPEAITIIQHKTFDRRLNLAKVVFKINFH 495
           YS   + FL+R  +++GP   T  + + +   L+L +  F  ++H
Sbjct: 153 YSNEKYKFLIRFVSFVGPPLDTFRKEECY--ALSLVRYSFLASYH 195


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,021,006
Number of Sequences: 5004
Number of extensions: 60664
Number of successful extensions: 108
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)