Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1079
         (741 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92812-5|CAB07279.1|  326|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical p...    29   4.6  
AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical...    28   6.0  

>Z92812-5|CAB07279.1|  326|Caenorhabditis elegans Hypothetical
           protein T03E6.5 protein.
          Length = 326

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/49 (32%), Positives = 19/49 (38%)
 Frame = -2

Query: 176 LFKKLGPLFTTTTHETIKALLLHFETCNFSTTPALVMLYKNCCFAFLPS 30
           LF  +G   TT        +   F    +  TP L  LY    F FLPS
Sbjct: 96  LFPTVGVSITTLLENRYYLMFARFRRWKYFRTPFLTSLYLASAFCFLPS 144


>Z83238-11|CAE11318.1|  326|Caenorhabditis elegans Hypothetical
           protein T08G3.12 protein.
          Length = 326

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = -2

Query: 158 PLFTTTTHETIKALLLHFETCNFSTTPALVMLYKNCCFAF 39
           P F   T + +KA+LLH     F+T   L   Y    + F
Sbjct: 184 PGFYVVTEDLLKAVLLHLGILTFTTVQVLYFFYHTVKYLF 223


>AL132862-27|CAB60564.1|  682|Caenorhabditis elegans Hypothetical
           protein Y73F8A.35 protein.
          Length = 682

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -3

Query: 739 IKDS*SIYSFTKIPVITRSPPID--IDSARIKNPPTVYDIAVAIMHSY*GKVTISGLRR* 566
           +KD+  +Y +    +I  +PPI   +D ++++     YD+ V ++ S      +  L R 
Sbjct: 153 LKDNLKVYGYMHSQIIP-TPPITPKVDVSKLQQ----YDVTVILLDSLAHAQALRSLPRA 207

Query: 565 LSYNTRHLT 539
           +SY T H++
Sbjct: 208 ISYMTSHMS 216


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,762,343
Number of Sequences: 27780
Number of extensions: 344427
Number of successful extensions: 617
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 599
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)