Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1077
         (643 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransfer...    29   0.43 
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    28   1.3  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    27   1.7  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   4.0  
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma...    26   4.0  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   9.3  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    25   9.3  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    25   9.3  

>SPCC1442.12 |||CDP-diacylglycerol--serine O-phosphatidyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 250

 Score = 29.5 bits (63), Expect = 0.43
 Identities = 19/72 (26%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
 Frame = +2

Query: 29  STFGPRTRNCLQSTSNGLNTMTVAEDCLF*CYIGT---SLFIVCGLARSEKKSLVMSERP 199
           S  G    +     S G++    A  C F  ++ T   SLF++CGL R  + ++ ++  P
Sbjct: 106 SLMGQELDSLADLISFGVSPAVFAFCCGFQTFLDTVILSLFVLCGLTRLARFNVSVNSIP 165

Query: 200 QPLRAINKFFDG 235
           +     ++FF+G
Sbjct: 166 KDGSGKSQFFEG 177


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 358 ATSSSNGKEEDRTKNGRDKERFPYRCRKET 447
           A SS N K     K+ + + RFP+ CR  T
Sbjct: 707 APSSRNAKSTSAHKSPKTEHRFPFPCRNVT 736


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 304 IQCKRKCDSPPSKTVFQVATSSSNGKEEDR 393
           +QC  +   P S  V + AT+SS GK+E++
Sbjct: 197 LQCINESVRPQSTKVKEEATTSSKGKDEEK 226


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1210

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -1

Query: 616 LASHTTDVFTQVVDCTRYCTILPIIS 539
           +ASHT   F      T YC ILP+IS
Sbjct: 489 IASHTAQSFKS----THYCNILPLIS 510


>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 112 QTILSNCHCIQAV*STLKTITSTRSKSRFLYIC 14
           Q +LSNCHC+ A    + ++      +   Y+C
Sbjct: 461 QYVLSNCHCLSAFYLCMPSLCQKSYGTERRYLC 493


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 206 LRAINKFFDGKEPWQIVSMTASSLLAIVWV-HSL 304
           LR + K F  KEPW++   +   +  ++ V HSL
Sbjct: 447 LRRVTKLFQLKEPWKLSDDSQEKIDTLMLVAHSL 480


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1111

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +2

Query: 488 LDPEQISQEVRDHLNLGAYDWKNGAVSG-AVYHLCED 595
           + PEQ++ EV DH+   A   KN ++S  A+  LC +
Sbjct: 648 IKPEQMTPEVWDHVFRQAPKPKNTSISDEALARLCRE 684


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
 Frame = +2

Query: 263 TASSLLAIVWVHSLYNARESVTVRLRKQFFRWLRQVPMVRKKIEQKMAEIKKDFHTDVEK 442
           +ASS      V +    RES T+     +     Q P  R+++ + + E  +     +EK
Sbjct: 264 SASSTTVNSAVSTKKRRRESSTISPESAYVAAQLQNPSEREQVHEFIKEQVRIARGRIEK 323

Query: 443 RLAGVTIRRELPEQ---GLDPEQISQEVRDHLNLGAYDWKNGAVSGAVYHLC 589
           +   V  +  + EQ    L   +I    ++   +   +W+N         LC
Sbjct: 324 KFTNVRGKNRIEEQLTLSLQEGKIPPYCQNCGTIKTANWRNATYMNITLMLC 375


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,597,085
Number of Sequences: 5004
Number of extensions: 50136
Number of successful extensions: 155
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)