Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1077
(643 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0345 + 23325842-23325964,23326384-23326828,23326965-233271... 31 1.0
04_03_0980 + 21406822-21409496,21410322-21410376 30 1.8
09_01_0002 - 81412-81944,82191-82539 29 4.1
03_02_0015 + 4965894-4966214,4966339-4966387,4966504-4966890,496... 29 4.1
05_04_0070 + 17643945-17644002,17644173-17644775,17645376-176455... 28 5.5
03_05_0134 + 21136413-21136704,21136936-21137465 28 7.2
02_05_0549 + 29900714-29900953,29902224-29902323,29902578-299027... 28 7.2
07_01_0307 - 2194796-2199274 27 9.6
04_04_1228 + 31888350-31892228,31892568-31893298,31893511-318935... 27 9.6
01_02_0111 - 11220179-11220322,11220430-11220497,11220611-112206... 27 9.6
>03_05_0345 +
23325842-23325964,23326384-23326828,23326965-23327188,
23327665-23328171,23328482-23328742
Length = 519
Score = 30.7 bits (66), Expect = 1.0
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +1
Query: 280 SHSLGSQ-FIQCKRKCDSPPSKTVFQVATSSSNGKEEDRTKNGRDKERFPY 429
+ S GS+ F++C+R DS KT TSSS E+ T + ++ Y
Sbjct: 155 TQSSGSKKFVRCQRASDSQRGKTAKLAETSSSGESGEEGTDSSTSEDESSY 205
>04_03_0980 + 21406822-21409496,21410322-21410376
Length = 909
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +2
Query: 404 AEIKKDFHTDVEKRLAGVTIRRELPEQGLDPEQISQEVRDHLNLGAYDWKNGAVSGAVYH 583
A I+ +H D+ + TI E+ +G + ISQ + DH+N+ D +S YH
Sbjct: 549 ALIENSYHVDMHIHVTSSTIYGEVQSEGTYKDSISQ-LSDHVNMQQQD----LISAGQYH 603
>09_01_0002 - 81412-81944,82191-82539
Length = 293
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 392 EQKMAEIKKDFHTDVEKRLAGVTIRRELPEQGLDPEQISQEVRDHLNLGAYDWKN 556
E ++ + FHT+ L + E PE+ DPE+ E ++HL++ A D +N
Sbjct: 197 EPEILRPNRVFHTN---DLNTAPVWTESPEEEEDPEERGFETQEHLSIHADDQEN 248
>03_02_0015 +
4965894-4966214,4966339-4966387,4966504-4966890,
4966976-4967034,4967128-4967241,4967344-4967460,
4967558-4967684,4967764-4968050,4968148-4968338,
4968801-4968886,4968975-4969051,4969161-4969304
Length = 652
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +2
Query: 212 AINKFFDGKEPWQIVSMTASSLLAIVWVHSLYNARESVTV 331
A+N GK P + M+ LLA++W+ L+ + T+
Sbjct: 398 AVNCMAGGKTPMSNIVMSTVVLLALLWITPLFKYTPNATI 437
>05_04_0070 +
17643945-17644002,17644173-17644775,17645376-17645579,
17646480-17647009
Length = 464
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 373 NGKEEDRTKNGRDKERFPYRCRK 441
N KE+ + K + KER P RC+K
Sbjct: 423 NDKEKKQNKKRKKKERVPRRCKK 445
>03_05_0134 + 21136413-21136704,21136936-21137465
Length = 273
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +1
Query: 373 NGKEEDRTKNGRDKERFPYRCRK 441
N KE+ + K + KER P RC+K
Sbjct: 232 NDKEKKQNKKIKKKERVPQRCKK 254
>02_05_0549 +
29900714-29900953,29902224-29902323,29902578-29902719,
29902720-29902826,29903179-29903480
Length = 296
Score = 27.9 bits (59), Expect = 7.2
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +2
Query: 377 VRKKIEQKMAEIKKDFHTDVEKRLAGVTIRRELPEQG-----LDPEQISQEVRDHLNLGA 541
+RK+ + EI +H E GV R P G LDP ++ ++D L LG+
Sbjct: 1 MRKRERENPCEICGHYHNSEEGERCGVCGHRSGPMAGEPPATLDPAFPTEVLKDFLFLGS 60
Query: 542 YD 547
Y+
Sbjct: 61 YN 62
>07_01_0307 - 2194796-2199274
Length = 1492
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -1
Query: 598 DVFTQVVDCTRYCTILPIISP*IQMISDFLRYLFRIQTLFRQFSSNCDSCES 443
D TQ C Y T+LPII P + +++++ Q + F +C S
Sbjct: 269 DSITQGTCCEEYLTVLPIIGPGGIGKTTLIQHIYNSQQVQNHFQIMVWTCVS 320
>04_04_1228 +
31888350-31892228,31892568-31893298,31893511-31893586,
31894089-31894164,31894571-31894656,31895414-31895482,
31895579-31895588,31895711-31896207
Length = 1807
Score = 27.5 bits (58), Expect = 9.6
Identities = 15/57 (26%), Positives = 25/57 (43%)
Frame = -1
Query: 613 ASHTTDVFTQVVDCTRYCTILPIISP*IQMISDFLRYLFRIQTLFRQFSSNCDSCES 443
A D TQ DC + T+LPI+ P + ++Y+++ + F C S
Sbjct: 304 AKSIIDYITQGTDCGKDLTVLPIVGPGGIGKTTLIQYIYKSLEVQNHFQVKVWICVS 360
>01_02_0111 -
11220179-11220322,11220430-11220497,11220611-11220644,
11220735-11220766,11220900-11220959,11221276-11221729
Length = 263
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 536 GAYDWKNGAVSGAV 577
G +DWKN AV+GA+
Sbjct: 212 GCHDWKNSAVAGAI 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,104,229
Number of Sequences: 37544
Number of extensions: 303129
Number of successful extensions: 864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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